Gene Bphyt_5894 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphyt_5894 
Symbol 
ID6277590 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phytofirmans PsJN 
KingdomBacteria 
Replicon accessionNC_010676 
Strand
Start bp2112831 
End bp2114900 
Gene Length2070 bp 
Protein Length689 aa 
Translation table11 
GC content67% 
IMG OID642616957 
Productdiguanylate cyclase/phosphodiesterase 
Protein accessionYP_001889600 
Protein GI187920568 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.528175 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones44 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGAGCT CATACAATTT TTGGCTGGTC ACCATCTCAC TCGTCGTCGC GACGTTGGCG 
TCGTACACGG CGCTCGACCT GACCGGCCGC ATTTTCCTGC TGGCGTCGGC GCGGCTGCGA
CACGCCTGGC GGCTGGGCGG CGCCGCCGCG CTCGGCGTCG GCATCTGGTC GATGCACTTC
ATCGCGATGC TCGCCTTTTC GCTGCCGATT CCGCTCGGCT ACGACTTTGC GACGACCGCC
GCGTCGCTCG GGCTCGCGAT CGGCGCCTCC TATCTGGCCC TGTACGTCAC GACTCTGCAG
CGGCTCACGC CGGGCCGCCT GCTGGCGGGT GGCGTGCTGA TGGGCTTCGG CATTGCCGGC
ATGCACTACA CCGGCATGGC GGCCTTGCAG ATGGCGCCAG GCATCCGCTA TCAGCCGGGG
TGGTTCGCGG CCTCGCTCGC GATCGCCATC GGCGCATCGA CCGCCGCGTT GTGGATGGCC
CGCGCGCTCA GCAACGACGG CGCGCGCCAC GTCGTGCGTA AGCGTCTGGG GGCGGCGCTC
GTGATGGGCG TGGCGATCAG CGGCATGCAT TACACGGCCA TGGCCGCCGC CGACTTTGTG
CCGGGCGCCA TCTGCGGCGC GGCCAAAGGC GTGAACGCCA CGTGGCTCGC GACCTCCGTG
ATCCTGCTCA CCTTTGCCAT TCTGACGGTC ACGCTGATGC TGTCGCGCTT CGACGCGCGC
AACGCCTTGC TGATCGGCGC GGTGTCCAGG CTGAACGGCC AGATCGTGCG GCTCGCCACG
CTCGACACAC TGACCGGCCT GCCGAACCGC AGCACGCTGA CCGACCGCAT CGAGCGCGCG
ATCCTCAGCG CGCGGCGGCA GCGCACGCTG TTCGCGATCC TCTTCATGGA CCTCGACGGC
TTCAAGACCA TCAACGATTC GCTCGGTCAC TCGGTCGGCG ATCAGGTTCT GACGGCGTTC
GCGCAGCGCC TGCTGCAATG TGTACGCGAG ACCGACACCG TCGCGCGGCT GGGCGGCGAC
GAATTCGTGG TGCTGGCCGA AAACCTCGGT TCGCGCGAAG ACGCCAGCGC GCTCGCGGAA
GGCGTGCTCG AGCGCATGCG CCTCGGCGTG TGGACCGACT CGCAGCCGCT GCAGGTCATG
CCGAGCATCG GCATCGCCCT CTATCCGCAC GACGGCGACT CCGTCGAGAC GCTGCTCAAG
CACGCCGACG CGGCCATGTA CGAGGCCAAA CGCGCGGGCC GCAGCACTTA TCGCTTCTTC
GAGCGCAGCA TGAACGAGGC CGCCACGCGC ACGCTGCAGA TCCAGAACGC GTTGCACGAC
GCGCTCGCCG CCGGCCATTT CTCGCTGCAC TTCCAGCCCA AGTTTCACGG CAACGGCAAC
TCGCTGGCGG GCGCCGAAGC GCTGATCCGT TTGCATCACC CGCAACTCGG CGCGCTGACG
CCGCTCGAGT TCATTCCGAT CGCCGAGCGC TCGGGGCAGA TCGTGCAGAT CGGCTACTGG
GTCGTGCGCG AAACCTGCCG GCAGATTCGC CGATGGGTCT CGCAGGGGCT GCCGGCGATG
AAAGTGGCGA TCAATCTGTC GCCGCGCCAG TTGCTGCAGC CGAACCTCGT CGCGAGCATG
CTCGCGATCG TCGAGGCCGA AGGCGTGGCC TGCGAGCAGA TCATGTTCGA GATCACCGAA
ACCGTGGCCA TGCAGGACGC GCCCAAGACC ATCGAAATGA TCCGCGAATT CCAGGCAAGC
GGCTTCGAGA TCGCGATCGA CGACTTCGGC ACCGGCTATT CGAGCCTCGC CTATCTGCAG
CGTTTTCGCG TCAAACAACT GAAGATCGAC CGCTTCTTCA CCAACGGCCT CGACGCGCAC
GGCCCGGAAG GCAGCGCGAT CGTGTCCGCG ATCATCGCCC TTGCGCATTC GCTGGAAATG
GATGTGGTGG CCGAGGGCGT CGAAACCGAA TCGCAACTCG GCATGCTCAA GACGATGCGG
TGCGACGAGA TGCAGGGTTT CCTGCTCGGC AAGCCGCTCG GCGCCGACGA CTTCGCCAAC
CTGCTGCGCG AGAGAATGGT GGCCGCGTAA
 
Protein sequence
MQSSYNFWLV TISLVVATLA SYTALDLTGR IFLLASARLR HAWRLGGAAA LGVGIWSMHF 
IAMLAFSLPI PLGYDFATTA ASLGLAIGAS YLALYVTTLQ RLTPGRLLAG GVLMGFGIAG
MHYTGMAALQ MAPGIRYQPG WFAASLAIAI GASTAALWMA RALSNDGARH VVRKRLGAAL
VMGVAISGMH YTAMAAADFV PGAICGAAKG VNATWLATSV ILLTFAILTV TLMLSRFDAR
NALLIGAVSR LNGQIVRLAT LDTLTGLPNR STLTDRIERA ILSARRQRTL FAILFMDLDG
FKTINDSLGH SVGDQVLTAF AQRLLQCVRE TDTVARLGGD EFVVLAENLG SREDASALAE
GVLERMRLGV WTDSQPLQVM PSIGIALYPH DGDSVETLLK HADAAMYEAK RAGRSTYRFF
ERSMNEAATR TLQIQNALHD ALAAGHFSLH FQPKFHGNGN SLAGAEALIR LHHPQLGALT
PLEFIPIAER SGQIVQIGYW VVRETCRQIR RWVSQGLPAM KVAINLSPRQ LLQPNLVASM
LAIVEAEGVA CEQIMFEITE TVAMQDAPKT IEMIREFQAS GFEIAIDDFG TGYSSLAYLQ
RFRVKQLKID RFFTNGLDAH GPEGSAIVSA IIALAHSLEM DVVAEGVETE SQLGMLKTMR
CDEMQGFLLG KPLGADDFAN LLRERMVAA