Gene Bphyt_5807 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphyt_5807 
Symbol 
ID6277438 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phytofirmans PsJN 
KingdomBacteria 
Replicon accessionNC_010676 
Strand
Start bp2012220 
End bp2012867 
Gene Length648 bp 
Protein Length215 aa 
Translation table11 
GC content64% 
IMG OID642616871 
ProductSNARE associated Golgi protein 
Protein accessionYP_001889514 
Protein GI187920482 
COG category[S] Function unknown 
COG ID[COG0586] Uncharacterized membrane-associated protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value0.468515 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones36 
Fosmid unclonability p-value0.433949 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATCTGA TGCATGTACT GCAGGTCGCC CTGCACTTCG ACCAGCACCT GAGCGGCCTG 
ATCGTGCAAT ACGGCACCGC CGTCTACGCG ATGCTGTTTC TCGTCGTGTT CGTCGAGATC
GGTTTTTTGC CGCTGTTCTT CCTGCCCGGC GATCCGCTGA TTTTCATTTG CGGCGGTCTC
GCGGCCACCG GCGCGCTGAA TGTCTGGCTC GTGATTCCGG TGCTGTTCGC CGCAACGGTG
GCGGGCAGTA TCGTCGACTA CGCGATCGGA CGGGCGATCG GCGAGAAAGT CTATACCGCC
GACTATCGCT GGCTCGACAA GAACGCGCTG CGCAAGGCGC ACGCGTTTTA CGAAGCGCGC
GGCGGGCTGA CCTTTCTGCT GTCGCCGTTC ATCGCCGTGG TGCGCACCTT CGCGCCGTTC
GTCGCCGGCG TTTCGCGCAT GACGTTCGCG CGTTTTGTGT CGTTCGTCAC CGCGGGCGCG
GCGTTATGGA TCGTGTCGCT GGTGGCGGCC GGCTATCTGT TCGGCAACGT GCCGCTGGTG
CGCGATCACA TGAGTTCGAT CGTGCTGTTA GGCGTCGCGC TCGGCGTCGG CTCGCTGCTC
ATGAGCGCCG TGTGGCGCTT CGTCAACCGG CGTTTGCGCG CGCGCTGA
 
Protein sequence
MDLMHVLQVA LHFDQHLSGL IVQYGTAVYA MLFLVVFVEI GFLPLFFLPG DPLIFICGGL 
AATGALNVWL VIPVLFAATV AGSIVDYAIG RAIGEKVYTA DYRWLDKNAL RKAHAFYEAR
GGLTFLLSPF IAVVRTFAPF VAGVSRMTFA RFVSFVTAGA ALWIVSLVAA GYLFGNVPLV
RDHMSSIVLL GVALGVGSLL MSAVWRFVNR RLRAR