| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_5512 |
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| Symbol | |
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| ID | 6280413 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | + |
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| Start bp | 1715734 |
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| End bp | 1716567 |
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| Gene Length | 834 bp |
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| Protein Length | 277 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 642616595 |
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| Product | shikimate 5-dehydrogenase |
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| Protein accession | YP_001889238 |
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| Protein GI | 187920207 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0169] Shikimate 5-dehydrogenase |
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| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.612524 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 0.276744 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTGACC AGTACTCGGT GATCGGCAAC CCGATCGGCC ACACGAAATC CCCGTTGATT
CACGGTCTCT TTGCACAAGA GACGCAGCAG GACATGTCCT ATACCGCCAT CGAAGGGCCA
TTAAGCCCGC ACGAGGCGTT TGCCGAGACC GTCAACGCTT TCAGGGCCGC GGGCGGCAAA
GGGATGAACG TCACGGCGCC CTTCAAGCTA AAGGCGTTCG CGATGGCCGA TGAGCGCAGT
GAGCGAGCGC AACTGGCCGG AGCAGCGAAC GCGCTGAAGT TTGAAGACGG CCGGATCGCG
GCGGAAAACT TCGACGGCGT GGGACTGGTG CGCGATATCG AAGTCAATCT GGACCTGCCG
ATGGCCGGCA AACGCGTCCT GGTCCTTGGC GCCGGCGGTG CGATGCGCGG GGCGTTGCTT
CCCTTCCTCG CGGCGCGGCC CGTTGAACTG GTCATTGCAA ACCGCGACGT GGCCAAAGCC
GAGGCGCTGG TGGCGCAAAT CGGAGCACGC GCCTCACTTA TCGCCTGCGG TTACGAAGAC
CTTGCGGCGA TGAGCGGCTT CGACCTGGTG GTGAACGCCA CGTCGGCCAG CCTCACCGGT
GAGTTACCGC CGGTTCCCCC GAATGTGTTC AACCCGAAAG GAGCGGCCTA CGAACTGGCC
TACGGCAAGG GGCTGACTCC CTTCCTGCGC CTCGCGCGCA ATGCGGGCGT GCTGGGCATC
GCGGATGGTG TCGGCATGCT GGTGGAACAG GCGGCGGAAG CATTCGCATG GTGGCGTGGC
ATCCGGCCCA GAACGCGGTC CCTCATCGAT CAGCTTACCG TTCCCCTCGA TTGA
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| Protein sequence | MTDQYSVIGN PIGHTKSPLI HGLFAQETQQ DMSYTAIEGP LSPHEAFAET VNAFRAAGGK
GMNVTAPFKL KAFAMADERS ERAQLAGAAN ALKFEDGRIA AENFDGVGLV RDIEVNLDLP
MAGKRVLVLG AGGAMRGALL PFLAARPVEL VIANRDVAKA EALVAQIGAR ASLIACGYED
LAAMSGFDLV VNATSASLTG ELPPVPPNVF NPKGAAYELA YGKGLTPFLR LARNAGVLGI
ADGVGMLVEQ AAEAFAWWRG IRPRTRSLID QLTVPLD
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