| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_5404 |
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| Symbol | |
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| ID | 6278430 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | - |
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| Start bp | 1595511 |
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| End bp | 1597547 |
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| Gene Length | 2037 bp |
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| Protein Length | 678 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642616489 |
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| Product | proprionate catabolism activator, Fis family |
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| Protein accession | YP_001889132 |
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| Protein GI | 187920101 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR02329] propionate catabolism operon regulatory protein PrpR |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0000463562 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 0.497573 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACGTT TCGTGGAACG TTTCAACGTA GACGGGAGCG CCGCGGTGTC CACTTTCACG
TCGTCCCATA CGAATCCCGA TCCGGGCCGC CCAGGCATTG CTTTGGTGAG TATCAGCCGG
TTGCAGTCGC TTTGCGAGAC TGTCGCACCG CGCTATGCCG GGCGCGCCAA AATCTTCTCC
GTCCGGGAGG GCTACGGCGC CGCCGTCACC GCCTTGCAGG CTTACGTGGA CGCGGGATCG
GTCGACGTCG TGCTGGCCGC TGGTTCGAAC GGCGCCTACC TGCGCGACAA CCTGAACGTG
CCGGTCGTCA TGGTCAAGGT GAACGGCTTC GACGTGCTCA GCGCAATCAC CCGCGCCACG
ACCACGTGGC CCAACGCGCA GATCGGCCTC GTGCTGCACG AAACGATCTC GCACGAACTG
GCCGACCTGA GCGCGTGGCT GAAAGTCAGC CTGAAACAGC GCGCCTACCG TTCGGTCGAC
GAGGTGCGGC TCGCAGTCGA CAGCCTCGCC GCGGAAGGCT GCAGCGTCAT CATCGGCCCC
GGCATGGCGT GCGATTTCGC CCAGCAGGCG GGCCTCGCGA GCGTTTTCCT GTACTCGCTC
GGCGCGGTCG AAGAAGCGTT CGAGCGCTCG GTCGAACTGG CTCGCGTGAG CCGCCAGAAG
GAATCGAAGC GCGTGCGCCT GAACACGATC GTGGCGCACC TGCGCGACGG CGTCGCCGCT
TTCGACGACG CCGGCCAGGT CGAAGCCGTC AATCCCGCCA TGCTCGACCT GCTCGGCCTG
GATCGCGAGC AGGACGTGCC CGCGCAAGTT GAACGCGCTG TCGGGCCTTT GCTGCGCGAG
ACGATCGAGC ACAACCTGCC GATCGAGGAG CGTATCGAGC AGATCGGCGG GCGCGCGCTG
ATCGTCAATT GCGTGCCGAT CGTGGAGCAG GGCGTGCGCT CCGGCTCGGT CATCACGTTG
CAGGACGCGC TGGTCGCGCA GCGGATCGAC CGCTCGCTGC GCACCAGCCA GCGGCCGAAG
CATCTGGTCG CGCGGCATCA ACTGGACGAT CTGATCGGCA ACTCGGCGGC GCTCGAGCGC
GTGCGGCGGC TGGCGCGCGC GGGCGCCGCG CACGACGCCA CCGTGCTCCT GAGCGGCGAA
AGCGGAACCG GCAAGGAACT GGTCGCGCAG GGCATCCACA ATGCGAGCCG GCGGCGCGGC
AATCCGTTCG TCGCGTTCAA TTGCGCGGCG TTGCCCGAGG GACTGATCGA AAGCGAACTG
TTCGGCCACG AGGAAGGCGC GTTCACGGGC GCGCGGCGCG GCGGCAAGCC GGGGCTGTTC
GAAATCGCCC ACACGGGGAC GATTTTTCTT GATGAAATCG GCGAGATGCC GGCGGCGCTG
CAAAGCCGTC TGCTGCGCGT GCTGCAGGAG CGCGAGGTAA TGAAGCTCGG CTCGGGACGC
GCCACGCCGG TCGACGTGCG GGTGATCGCC GCCACGCACC GCGATCTGCA CGCGCTGGTC
GAGCAGGGCG CGTTTCGCGC GGATCTGTAT TTTCGTCTGA ATCTGCTTCA GCTAAAATTG
CCGCCGCTAC GCGATCGGCG TGACGATGTG CCGCAACTGG CGCGTTACCT GTTGAGCCGC
AGTGCGCTCC AATATGGCTT GACGGAGGGC GCGTCCGAGC GAGTGCTGGC GTTTCTCGCG
CCGCTGTTCG AGCACTACGC GTGGCCCGGC AATGTACGGG AACTGGAAAA TCTGCTGACG
CGTGCCGCGA TCTATTGCGG CGATGCAGCG GGTGACGCCG GTCAGGATTG GCAGGCGATG
TTCCCGGAAT TCGGGCGCAT GAAGGCGGCC GCCGCGACGT TAAGCGACTT CGGCGTGAGC
GGGACAAAAA ACGGCGCAAA CGGTGTGAAT GCCGCCGCGG AGCCCGCCCC AAGCCGCATC
AGCCCAACGC GCGGGGACGT GCTCCACGCT CTCGAACAGG CCGGCGGCAA CCGCGCTGCG
GCGAGCCGGG CGCTGGGCAT TGGCCGCACT ACCCTCTGGC GTCTTCTGAA GGACTGA
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| Protein sequence | MKRFVERFNV DGSAAVSTFT SSHTNPDPGR PGIALVSISR LQSLCETVAP RYAGRAKIFS
VREGYGAAVT ALQAYVDAGS VDVVLAAGSN GAYLRDNLNV PVVMVKVNGF DVLSAITRAT
TTWPNAQIGL VLHETISHEL ADLSAWLKVS LKQRAYRSVD EVRLAVDSLA AEGCSVIIGP
GMACDFAQQA GLASVFLYSL GAVEEAFERS VELARVSRQK ESKRVRLNTI VAHLRDGVAA
FDDAGQVEAV NPAMLDLLGL DREQDVPAQV ERAVGPLLRE TIEHNLPIEE RIEQIGGRAL
IVNCVPIVEQ GVRSGSVITL QDALVAQRID RSLRTSQRPK HLVARHQLDD LIGNSAALER
VRRLARAGAA HDATVLLSGE SGTGKELVAQ GIHNASRRRG NPFVAFNCAA LPEGLIESEL
FGHEEGAFTG ARRGGKPGLF EIAHTGTIFL DEIGEMPAAL QSRLLRVLQE REVMKLGSGR
ATPVDVRVIA ATHRDLHALV EQGAFRADLY FRLNLLQLKL PPLRDRRDDV PQLARYLLSR
SALQYGLTEG ASERVLAFLA PLFEHYAWPG NVRELENLLT RAAIYCGDAA GDAGQDWQAM
FPEFGRMKAA AATLSDFGVS GTKNGANGVN AAAEPAPSRI SPTRGDVLHA LEQAGGNRAA
ASRALGIGRT TLWRLLKD
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