Gene Bphyt_5355 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphyt_5355 
Symbol 
ID6280547 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phytofirmans PsJN 
KingdomBacteria 
Replicon accessionNC_010676 
Strand
Start bp1537749 
End bp1538900 
Gene Length1152 bp 
Protein Length383 aa 
Translation table11 
GC content63% 
IMG OID642616441 
Productporin Gram-negative type 
Protein accessionYP_001889084 
Protein GI187920053 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3203] Outer membrane protein (porin) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones32 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones36 
Fosmid unclonability p-value0.483069 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAAAAAGA TTTCCGCCGC GGTTGCGGCG TTCGCAGGAC TTGCCGCCGC CACGGCGCAT 
GCGCAAAGTT CAGTCACGCT GTACGGCCTC ATCGACGCCG GGGTGATGTA CACCAACAAC
GTAAAGAAGG GCGGCTCGCA GGGCGCGCTG GTTCAGGCCA CTAGCGGCAA CATCAACGGC
AGCCGCTTCG GCTTGCGCGG CGCGGAAGAT CTCGGCGGCG GATTGCAGGC GATCTTCGTG
CTGGAGAACG GCTATAACTT GCAGAACGGC AAGCTCGGCC AGAACGGCCG GCTGTTCGGC
CGTCAGGCGT TTGTCGGCTT GAGCAGCAAG CAGTACGGCA CGTTCACGCT GGGCCGCCAG
TACGATTCGC TGGTCGATTT CGTCGCGCCG CTCTCGGGCA CGGCGGGCAC GTTCGGCGAT
ACCGGCTTCG CGCATCCGTT CGACAACGAC AATCTGAATC ACTCGGTGCG CATGAGCAAC
GCCGTGAAGT ACGCGAGCGC GAACTATGCC GGTCTGAAGT TCGGCGGAAT GTACGCCTTC
TCGAACAACA CGGGCTTCGC GGTCAATCGT GCCTATAGCG CGGGCGTGAG CTATGCCAAC
GGTCCGTTCA AGGCGGCTGC CGGCTATTTG CAGATCAACG GTTCGAACTC GAGCGCCAAC
ACGGCCGGCG CGGTCGATCT CGGCGAATCC GCGGCCAACG GCACGGGCGG CTTCCAGCTC
GGCGCCGATG TGCAGCGCAC GGCCGGCGCC GCGTTGAGCT ATGGTTTCGG TCCCGTAACG
GCGGGCTTCG TCTATACGCA TAGCCAGTTC CAGAACACCG CGTCGTTCGG CGCCACGCAT
GGCTCGATGC GCTTCGATAA CTATGAAGTG AACGGCAAGT ACGCCATGAC GCCCGCGCTG
AGCCTCGGCG CGGCCTACAC CTTTACGGAC GCGCATGTGG GCGGCACCTC GAGCTTCGGG
GCGGATCCGA AATGGAATCA GATGAATCTG CAGGCCGTCT ATTCGCTGTC GTTGCGCACC
GACGTGTATG CCGAAGCGAT GTATCAGCAC GTGAGCGGCA AGGGCTACAC GGCGTTTATC
AACACGGCGG GCGGCGCGTC GTCCACGGGT AATCAGGTGG TCGGCACGGT GGGGATCCGC
ACGCGCTTTT GA
 
Protein sequence
MKKISAAVAA FAGLAAATAH AQSSVTLYGL IDAGVMYTNN VKKGGSQGAL VQATSGNING 
SRFGLRGAED LGGGLQAIFV LENGYNLQNG KLGQNGRLFG RQAFVGLSSK QYGTFTLGRQ
YDSLVDFVAP LSGTAGTFGD TGFAHPFDND NLNHSVRMSN AVKYASANYA GLKFGGMYAF
SNNTGFAVNR AYSAGVSYAN GPFKAAAGYL QINGSNSSAN TAGAVDLGES AANGTGGFQL
GADVQRTAGA ALSYGFGPVT AGFVYTHSQF QNTASFGATH GSMRFDNYEV NGKYAMTPAL
SLGAAYTFTD AHVGGTSSFG ADPKWNQMNL QAVYSLSLRT DVYAEAMYQH VSGKGYTAFI
NTAGGASSTG NQVVGTVGIR TRF