Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_5355 |
Symbol | |
ID | 6280547 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010676 |
Strand | - |
Start bp | 1537749 |
End bp | 1538900 |
Gene Length | 1152 bp |
Protein Length | 383 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 642616441 |
Product | porin Gram-negative type |
Protein accession | YP_001889084 |
Protein GI | 187920053 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3203] Outer membrane protein (porin) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 32 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 36 |
Fosmid unclonability p-value | 0.483069 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAAAAAGA TTTCCGCCGC GGTTGCGGCG TTCGCAGGAC TTGCCGCCGC CACGGCGCAT GCGCAAAGTT CAGTCACGCT GTACGGCCTC ATCGACGCCG GGGTGATGTA CACCAACAAC GTAAAGAAGG GCGGCTCGCA GGGCGCGCTG GTTCAGGCCA CTAGCGGCAA CATCAACGGC AGCCGCTTCG GCTTGCGCGG CGCGGAAGAT CTCGGCGGCG GATTGCAGGC GATCTTCGTG CTGGAGAACG GCTATAACTT GCAGAACGGC AAGCTCGGCC AGAACGGCCG GCTGTTCGGC CGTCAGGCGT TTGTCGGCTT GAGCAGCAAG CAGTACGGCA CGTTCACGCT GGGCCGCCAG TACGATTCGC TGGTCGATTT CGTCGCGCCG CTCTCGGGCA CGGCGGGCAC GTTCGGCGAT ACCGGCTTCG CGCATCCGTT CGACAACGAC AATCTGAATC ACTCGGTGCG CATGAGCAAC GCCGTGAAGT ACGCGAGCGC GAACTATGCC GGTCTGAAGT TCGGCGGAAT GTACGCCTTC TCGAACAACA CGGGCTTCGC GGTCAATCGT GCCTATAGCG CGGGCGTGAG CTATGCCAAC GGTCCGTTCA AGGCGGCTGC CGGCTATTTG CAGATCAACG GTTCGAACTC GAGCGCCAAC ACGGCCGGCG CGGTCGATCT CGGCGAATCC GCGGCCAACG GCACGGGCGG CTTCCAGCTC GGCGCCGATG TGCAGCGCAC GGCCGGCGCC GCGTTGAGCT ATGGTTTCGG TCCCGTAACG GCGGGCTTCG TCTATACGCA TAGCCAGTTC CAGAACACCG CGTCGTTCGG CGCCACGCAT GGCTCGATGC GCTTCGATAA CTATGAAGTG AACGGCAAGT ACGCCATGAC GCCCGCGCTG AGCCTCGGCG CGGCCTACAC CTTTACGGAC GCGCATGTGG GCGGCACCTC GAGCTTCGGG GCGGATCCGA AATGGAATCA GATGAATCTG CAGGCCGTCT ATTCGCTGTC GTTGCGCACC GACGTGTATG CCGAAGCGAT GTATCAGCAC GTGAGCGGCA AGGGCTACAC GGCGTTTATC AACACGGCGG GCGGCGCGTC GTCCACGGGT AATCAGGTGG TCGGCACGGT GGGGATCCGC ACGCGCTTTT GA
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Protein sequence | MKKISAAVAA FAGLAAATAH AQSSVTLYGL IDAGVMYTNN VKKGGSQGAL VQATSGNING SRFGLRGAED LGGGLQAIFV LENGYNLQNG KLGQNGRLFG RQAFVGLSSK QYGTFTLGRQ YDSLVDFVAP LSGTAGTFGD TGFAHPFDND NLNHSVRMSN AVKYASANYA GLKFGGMYAF SNNTGFAVNR AYSAGVSYAN GPFKAAAGYL QINGSNSSAN TAGAVDLGES AANGTGGFQL GADVQRTAGA ALSYGFGPVT AGFVYTHSQF QNTASFGATH GSMRFDNYEV NGKYAMTPAL SLGAAYTFTD AHVGGTSSFG ADPKWNQMNL QAVYSLSLRT DVYAEAMYQH VSGKGYTAFI NTAGGASSTG NQVVGTVGIR TRF
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