Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_5085 |
Symbol | |
ID | 6280144 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010676 |
Strand | - |
Start bp | 1249567 |
End bp | 1250643 |
Gene Length | 1077 bp |
Protein Length | 358 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 642616175 |
Product | transcriptional regulator, AraC family |
Protein accession | YP_001888818 |
Protein GI | 187919787 |
COG category | [K] Transcription |
COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.145128 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 0.0831016 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACACA TCAAAGTCGG CATGGTGGTC TTTCCCGGCT TCCAGCTGCT CGACATTGCC GGTCCGAAAG ACGCCTTTGC CGAAGTGAAA ATACTCAGCA AGGGTGAGTC GGAATACGAA ATGCTGACCG TCGGCACCAC GCGCGGCAGC CTGCAGTCTT CGAGCGGGCT GACCATCATG CCCGACCGCA CCATTTTCGA CGTGTGCCCG GAATTCGACA CGATCATCGT GCCAGGCGGC CTCGGCATTT TCGAGGCCTT CGACGACCCC GCGCTGAGCG GCTGGCTCAA GGATCGGCAC AAGCAATGCC GGCGCATGTC GGCGATCTGC AACGGCCTGT TCGCGCTCGG TTCGGCCGGG CTGCTCGACA ACCGCGTGGT CACCACGCAC TGGATGGACG TGCCGCGCCT CGCGGCCACC TTTCCGAAGG CGCGCATCGA GCCCGACCAT ATCTACGTGC AGGACGGCAG CATCTTCACA ACGGCTGGCG TGACCGCCGG GATCGACCTG TCGCTCGCGA TGATCGAAGC CGATTTCGGC CGGCAAATGG CGCTCGATGT CGCCAAATAT CTCGTGGTCT ATCTTCGCCG TGCGGGCGGC CAGTCGCAAT TCAGTCCGCT ACTCGAAGTG CAGGCTTCGC CGTCGACGCA AACGCTCTTG TTGCAGCAGT ACATGCTCGA CAATCTGCAT GTCGATCATA CGGTGACCAC GCTCGCAGAA CGCGCGCATA TGAGCGCGCG CAATCTGTCG CGGACCTTCA TGAAAGAATG CGGCGTCACG CCGATGACAT TCCTCAGCCA CGCGCGAATC GACGCGGCAC GGCATTATCT GGAAGCCACC ACTTTGCCCT TGCGTGAAAT CGCGCGCCGT TGCGGATTCG ACAATACGGA CGGGTTTCGC CGCATCTTCC AGCGGCGTCT GCAGATCAAT CCCGCGGAGT ATCGCGAACG GTTCAGGTCG AGCAATGGAT CGTCCAGAAA CGGCGTGGGC ACGGTGCTCG CTGAAACGCG TCACGCGGAT AGCGCGAGCC GCGCTATCAA TACGTCGATC AAGGCCCGCA CTTTGGCTGA GGAATGA
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Protein sequence | MKHIKVGMVV FPGFQLLDIA GPKDAFAEVK ILSKGESEYE MLTVGTTRGS LQSSSGLTIM PDRTIFDVCP EFDTIIVPGG LGIFEAFDDP ALSGWLKDRH KQCRRMSAIC NGLFALGSAG LLDNRVVTTH WMDVPRLAAT FPKARIEPDH IYVQDGSIFT TAGVTAGIDL SLAMIEADFG RQMALDVAKY LVVYLRRAGG QSQFSPLLEV QASPSTQTLL LQQYMLDNLH VDHTVTTLAE RAHMSARNLS RTFMKECGVT PMTFLSHARI DAARHYLEAT TLPLREIARR CGFDNTDGFR RIFQRRLQIN PAEYRERFRS SNGSSRNGVG TVLAETRHAD SASRAINTSI KARTLAEE
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