| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_5080 |
|---|
| Symbol | |
|---|
| ID | 6280099 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | + |
|---|
| Start bp | 1242291 |
|---|
| End bp | 1244339 |
|---|
| Gene Length | 2049 bp |
|---|
| Protein Length | 682 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642616171 |
|---|
| Product | pyridoxamine 5'-phosphate oxidase-related FMN-binding |
|---|
| Protein accession | YP_001888814 |
|---|
| Protein GI | 187919783 |
|---|
| COG category | [C] Energy production and conversion
[R] General function prediction only |
|---|
| COG ID | [COG1018] Flavodoxin reductases (ferredoxin-NADPH reductases) family 1
[COG3576] Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.644036 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.000684551 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGTCCTCCT TTATCCCTCT GAATGGCTGG GGCGTCGACA CCTCGCCGTT TCATGCCGCG
GAAGTCGCCG CCCAGCAGCG CGTGGGCGTG AGAAGCGTGG CTGAAGCGTC GGGACGCCGG
GGGATCCGGC GCTACATGCC GGACCAGCAT CGTAAGTTTT TTGCCGAGCA GCCGTTCATG
GTGATCGGCG GCGTCGATGC GCACGGGCAG CCGTGGGCGA CGGTGCGCGC CGGCCTGCCG
GGCTTCGTGT CGTCGCCGGA TGCGAAGACC TTGCGCATCG AAGGCGGCGC GTTAGCCGGC
GATCCGCTCG CGAATAGCTG GCAGAAGGGT TCGATGATCG GCGGCCTCGG GCTGCAGCCG
CAGACTCGCC GGCGCAACCG GATCAATGGC ATGGTGATGT CAGCGGACGG GGCGGCGTTG
ACGCTCGATG TTCATCAGAG TTTCGGCAAC TGCAACAAGT ACATCCAAAG CCGTACACCG
ACGTGGGTCG AGCCGAGTGC TTCCGAGCCT CCCATGCCGC CGGAAATAGC GGCGCAACTC
AGCGATGCCG ACCGCGCATT CCTGGCGCGG GCGGATACGT TTTTCATCGC GAGCGCGAAT
CTTGCGGACG ACGCCGAGCT CGCGCGCGGC GTCGACGTTT CGCATCGCGG CGGCGCGCCG
GGCTTTGTGC GTGTGGACGA TGAACACACG CTGACGACCC CCGACTTTGT CGGCAACAAC
TTCTTCAACA CGATCGGCAA CCTGATCCAC GATCCGCGTG CCGGGTTGCT GTTCATCGAC
TTTGCGAGCG GCGATCTGCT GTATATCGCG GCGCGCGCGG AAATCATCTG GGACGGCGCG
GAAGTGGCGG CCTTCGAAGG CGCGCAACGG CTCGTGCGTT TTCACGTGCT GGAAGTACGG
CGCAGCCGGA GCGCGTTGCC GTTTCGCTGG TCGGACGTCG GGTACGCGCC GCAGTTTGCG
GCGGCAGTGC AAAAGCCGGT GGCTGCATCG CCGTGGCACA AGCTGAAGGT CGCGGCAGTG
GTCGAGGAGA CTGCGTCGAT CCGTTCCTTC TATTTTGAAC CGGTCGACGG TGCACCGTTG
CCGTCGTACA AGCCGGGGCA GTTTCTGCCG ATTCGCGTGC CTGTGGAGGG CTCTACCACG
CCTTTGTCGC GGACGTATAC GCTCTCCGAT GCGCACGATC CGCAGCGGTA TCGAATCAGC
GTGAAGCGCG AAGGCGTTGC GTCGAAATGG CTGCATGAGC ATCTGGTTGC GGGAGCGCAG
ATTGAAGCGA TGAAGCCGCG TGGCGCTTTC ATTTTCGATG AAGAGAGCCC GCGGCCCGCC
GTGTTCATTT CGGCAGGCAT CGGCATCACA CCGATGATGG CAATGCTTAG ACACGCGTTG
GCAGCGTCTC GCACTGAGGG TGCGCTGGCG AAGCGAGTGT TCTTCTTTCA CGGCGCGCGT
AGCGATCGCG AACGTCCGTT TAGTGCGCAA TTGAAAGAGC TTGCCGCGCG CAATCCGGCG
CTTTCACTGC ATCTTTTCGA TAGTGCCGCT GACGGAGTGA CCGAAGGCGT GTCGGCCGGT
CGTGTAAGCA TCGACGCATT AAAGCGCGCG CTTCCGTTCG ATGACTACGA CTTCTATCTG
TGCGGCCCCG AGCAGTTCAT GCGCGACCTG TACGAAGGTC TGCGCGGATT GAATGTCGCC
GATGAACGGA TTCGTTTCGA AGCGTTCGGT CCGGCGAGCG TCAAGCGCGC GGTTGCCGTC
AAGAGCGAGC CAGTGCCGGC GGCCACGCCG GTACGAGACG CGGGTGCTGT GCAAGTGACC
TTTGCGCGCT CCGAGCGCAC GATTCAATGG CTGCCGCGCG ACGGCAGCCT GCTTGAATTC
GCCGAAGCGC ACGGTATCGA CGCGCCGTCG AGTTGCAGGT CGGGTATGTG CGGGACGTGT
TCGACGCGGT TGCTGTCGGG CAAGGTCAAA TACGACGGCG AAGTGGAGGC GCAGATCGAA
CCCGGCGCGG CGCTGGTTTG CATGGCGCAT CCGGTTGCGG GCGACGCGGG TGTGACATTG
GATCTGTGA
|
|---|
| Protein sequence | MSSFIPLNGW GVDTSPFHAA EVAAQQRVGV RSVAEASGRR GIRRYMPDQH RKFFAEQPFM
VIGGVDAHGQ PWATVRAGLP GFVSSPDAKT LRIEGGALAG DPLANSWQKG SMIGGLGLQP
QTRRRNRING MVMSADGAAL TLDVHQSFGN CNKYIQSRTP TWVEPSASEP PMPPEIAAQL
SDADRAFLAR ADTFFIASAN LADDAELARG VDVSHRGGAP GFVRVDDEHT LTTPDFVGNN
FFNTIGNLIH DPRAGLLFID FASGDLLYIA ARAEIIWDGA EVAAFEGAQR LVRFHVLEVR
RSRSALPFRW SDVGYAPQFA AAVQKPVAAS PWHKLKVAAV VEETASIRSF YFEPVDGAPL
PSYKPGQFLP IRVPVEGSTT PLSRTYTLSD AHDPQRYRIS VKREGVASKW LHEHLVAGAQ
IEAMKPRGAF IFDEESPRPA VFISAGIGIT PMMAMLRHAL AASRTEGALA KRVFFFHGAR
SDRERPFSAQ LKELAARNPA LSLHLFDSAA DGVTEGVSAG RVSIDALKRA LPFDDYDFYL
CGPEQFMRDL YEGLRGLNVA DERIRFEAFG PASVKRAVAV KSEPVPAATP VRDAGAVQVT
FARSERTIQW LPRDGSLLEF AEAHGIDAPS SCRSGMCGTC STRLLSGKVK YDGEVEAQIE
PGAALVCMAH PVAGDAGVTL DL
|
|---|
| |