| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_5077 |
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| Symbol | |
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| ID | 6277575 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | + |
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| Start bp | 1239379 |
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| End bp | 1240527 |
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| Gene Length | 1149 bp |
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| Protein Length | 382 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 642616168 |
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| Product | porin Gram-negative type |
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| Protein accession | YP_001888811 |
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| Protein GI | 187919780 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3203] Outer membrane protein (porin) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.0332495 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.00543855 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAGAAGA AAAATGCCGT CAGCCTTTCG GGACTCGCTA TCGCGGCAAG CGCTGTATGC
GCGCCGACTG CTGCTCATGC ACAAAGCAGC GTCACCCTTT ACGGCATTCT GGATGCCGGC
ATTACCTACG TGAACAATGC CGGCGGGGCT CACCAGTTCA AGTTCGATGA CGGTATTTCA
TACGGCAACC GGATCGGCTT CAAGGGCGTC GAGGATCTCG GCGGCGGCTT GCAGGCAGTG
TTCGCGCTCG AATCGGGTTT TCACGTGGGC AATGGGCAAT ATGCATTCGG CGGTGCCGAG
TTCGGACGCC AGGCTTATGT GGGCCTGAAG AACAACTGGG GGCAACTCTC GTTTGGTAAT
CAACTGGACA TGACCGAGGA GTTCGTCTAC CTGTATAACA TCTCGGCGTG GGCGAGCGGT
TACGCGATCC ATCAAGGCGA CTTCGACCGG ATGAACGGCG ACCGGCTGCC GAACTCGGTC
AAGTTCCTCT CCAACGACTA TGCAGGCTTC TCGTTCGGCG GCATGTACTC GTTCGGCAAT
ACGGCCGGTG ACTTCCACAA CAAGAGCGCG TGGAGCGTGG GCGCGCGTTA CGAGCACAGC
GCGTTCAACA TGGGCGCGGC CTATACGCAG TTGAACAATC CGAACGGCAT CTATGCATTC
GACCCGTACG CGATGATCGG CACACGGACG TTCCTCGGCA AGCCGACCGT GTCCGTCGAT
CCGGCGACCG GCGCGGTGAC GGATCTGTAT AGCTCGTCGG CGTTTCCGGT CGACAAGCAA
GGGGCGTTCG CAGTCGGCGC GGCCTATACG ATCGGCAAGG TCATGTTGAG CGGCGATTTC
ACCTACACGA CGATCAAGGG ACTCGGCGAG ACCTCGCATA TGCAGGTGTA TGAAGCGGGC
GCCTCGTACA CCTTCACGCC CGCGTTGATG CTGTACGGCG GCTATCAGCA CACGCGGTTC
GAAGGCAATC ACTGGAACCA GGGCTCGCTC GGGTTGCATT ATCTGCTCTC CAAGCGTACG
GACGTCTATA TCTCCGGCGA CTATCTGCGC GCGTCGGACG GCGTGAATGC AGTGATCGGC
TACAGCTTCA CGCCGTCCAC GTCGAACACG CAGACCGATG TGCGGATCGG CATGCGGCAC
TCGTTCTGA
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| Protein sequence | MKKKNAVSLS GLAIAASAVC APTAAHAQSS VTLYGILDAG ITYVNNAGGA HQFKFDDGIS
YGNRIGFKGV EDLGGGLQAV FALESGFHVG NGQYAFGGAE FGRQAYVGLK NNWGQLSFGN
QLDMTEEFVY LYNISAWASG YAIHQGDFDR MNGDRLPNSV KFLSNDYAGF SFGGMYSFGN
TAGDFHNKSA WSVGARYEHS AFNMGAAYTQ LNNPNGIYAF DPYAMIGTRT FLGKPTVSVD
PATGAVTDLY SSSAFPVDKQ GAFAVGAAYT IGKVMLSGDF TYTTIKGLGE TSHMQVYEAG
ASYTFTPALM LYGGYQHTRF EGNHWNQGSL GLHYLLSKRT DVYISGDYLR ASDGVNAVIG
YSFTPSTSNT QTDVRIGMRH SF
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