Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_5062 |
Symbol | |
ID | 6280016 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010676 |
Strand | - |
Start bp | 1220438 |
End bp | 1221433 |
Gene Length | 996 bp |
Protein Length | 331 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 642616153 |
Product | transcriptional regulator, AraC family |
Protein accession | YP_001888796 |
Protein GI | 187919765 |
COG category | [K] Transcription |
COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.652687 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 0.0215007 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCACCG ATCGCACGGC GTCGTTGTCG CATTTCGCAT TCATGCCGGT CCCCAACTTC ACCATGATTG CGTTCACCAA CGCGATCGAA GTCCTGCGCA TGGCGAATTA CCTCACGGGC CAAACGCTTT ACCGCTGGTC GATCGTGAGT CCCGACGGCG GCCCGGTCAT GGCCAGCAAT GGTCTGTCGG TCGACACGGG GCCGGTTGAA TGCGTCGGCC AGCCGGATAT CGTGTTCGTG GTCGGCGGCA TCGACGTGCA GCGCGCCACC ACGCCGGCCC ATCTCTCCGC CTTGCGCCGC TTCGCCCGCC TGGGCTGCGT GCTCGGCAGC CTGTGCACCG GCACGTATGC GCTGGCGCGC GCCGGTTTGC TGGCCGGTTA TGCGTGCGCG ATTCACTGGG AGAACATGTC GGCGCTCAAG GAAGAGTTTC CCGACACGCG TTTTCTGAAG GAACTGTTCG TGGTGGACCG CGATCGGGTG ACGTGCACGG GCGGCGTCGC GCCGCTCGAC ATGATGCTGA ACCTGATTGC GCCGCGCGTC GGCACGGCAC GCGTCACGCA GATCGCCGAG CAGTTCATCG TCGAACATGT GCGCGATACC AGCGCGCAAC AGAAAATGCC GCTGGTGGCG CGGCTCGGCT CGGCCAACAA GTCGCTCTTC GAAGTGATCT CGCTGATGGA GAACAATATC GAAGAGCCGC TCTCGCGCGA AGAACTCGCG CGGCTCGCGG GCATGTCGCA ACGCCAATTG CAGCGTTTGT TCCGCGAGCA TCTGGGCATG ACGCCGACGC ATTACTACCT GACGCTGCGC TTGCGGCGCG CACGCGAGTT GCTGCTGCAA ACGGATATGT CGATCATGCA CATCACGATG GCATGCGGCT TCCAGTCGGC TTGCCACTTC TCGAAGAGCT ATCGCGACGC GTTCGGCACG GCGCCGACGC GCGAACGACG CAAGCAGGCG CCGTCGCTCG CTGCGGTGCC GGTGCTGGCG GCCTGA
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Protein sequence | MSTDRTASLS HFAFMPVPNF TMIAFTNAIE VLRMANYLTG QTLYRWSIVS PDGGPVMASN GLSVDTGPVE CVGQPDIVFV VGGIDVQRAT TPAHLSALRR FARLGCVLGS LCTGTYALAR AGLLAGYACA IHWENMSALK EEFPDTRFLK ELFVVDRDRV TCTGGVAPLD MMLNLIAPRV GTARVTQIAE QFIVEHVRDT SAQQKMPLVA RLGSANKSLF EVISLMENNI EEPLSREELA RLAGMSQRQL QRLFREHLGM TPTHYYLTLR LRRARELLLQ TDMSIMHITM ACGFQSACHF SKSYRDAFGT APTRERRKQA PSLAAVPVLA A
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