| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_4985 |
|---|
| Symbol | |
|---|
| ID | 6278626 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | - |
|---|
| Start bp | 1120286 |
|---|
| End bp | 1122781 |
|---|
| Gene Length | 2496 bp |
|---|
| Protein Length | 831 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642616071 |
|---|
| Product | FAD dependent oxidoreductase |
|---|
| Protein accession | YP_001888719 |
|---|
| Protein GI | 187919688 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0404] Glycine cleavage system T protein (aminomethyltransferase)
[COG0665] Glycine/D-amino acid oxidases (deaminating) |
|---|
| TIGRFAM ID | [TIGR01375] sarcosine oxidase, gamma subunit family, heterotetrameric form |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 0.0450258 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCACAC CTCTTCCTAC TCACGCGCGC GTCGTCATCG TCGGCGGCGG GATCATCGGC
TGCTCGGTCG CCTACCATTT GACGAAGCTG GGCTGGACCG ATGTAGTGCT TCTCGAACAG
GGCCAACTCT CGTGCGGCAC GACCTGGCAC GCGGCCGGAC TCGTCGGCCA GTTGCGCGCG
CAGGAAAGCA TGACGAAGCT GATCCGCTAT TCGACCGCGC TCTATGCCGA ACTCGAAGCC
GATACCGGCC TCGCCACCGG CTGGAAGCAA TGCGGCTCGC TCTCGGTGGC GCGCACGGCC
GAGCGGATGA CGCAACTCAA ACGCACCGCC GCCGTCGCGC GCGCCTACGG CGTGGCCTGC
GACGTGATCA GCCCGCGCGA AGCCGGCGAC CTGTGGCCGG TCATGCGCAC CGACGACCTG
CTCGGCGCGG TCTGGCTGCC CGGCGACGGC AAGGCGAATC CCACCGACCT GACCCAGGCT
CTAGCCCGCG GCGCTCGCCA GCGCGGCGCG CGCATCGTCG AGAATACCCG CGTCACGGCG
ATCCACACGC GCACCGCGCA AGACGGCAAG GCGAACGGCG CGCGTGAAGT CAGCGGCCTC
GCGTGGCGCA ACAAGGACGG CGAGGAAGGC ACGCTCGGCG CGGACATCGT CGTGAATTGC
GCGGGCCAGT GGGCCAAGGG CGTCGGGCGC CTGTGCGGCG TGACCGTGCC GCTGCATTCG
GCCGAGCACT ACTACATCGT CACGGAACGG ATTGCCGGCG TGCATCCGGA TCTGCCGGTG
ATGCGCGACC CGGACGGCTT CATCTATTTC AAGGAAGAAG TGGGCGGCCT CGTGATGGGC
GGCTTCGAGC CGGATGCGAA ACCGTGGGGC ATGAACGGCA TCCCCGAGAA TTTCGAGTTT
CAACTGCTGC CGGACGATTG GGATCAGTTC GAAATCCTGA TGAAAAACGC GCTGCAGCGC
GTGCCCGCGC TCGAAACCGC TCAGGTGAAG CAGTTCTATA ACGGCCCCGA ATCGTTCACG
CCGGACAACA ACTTCATGCT GGGCGAAGCG CCCGAACTGC GGCGCTTTTT CGTCGGCGCG
GGTTTCAATT CGATGGGGAT CGCGTCGGCG GGCGGCGCCG GGATGGCGCT CGCGGAATGG
ATCGTTGCGG GCGAGCCGAC CATGGATCTG TGGCCGGTCG ATATTCGCCG CTTCGCGCGC
TTCAACGGCA ACGACACGTG GCTGCACGAT CGCGTGAAGG AAACGCTCGG CCTGCATTAC
GCGATGCCCT GGCCGAATCG CGAACTCGAT AGCGCGCGGC CGTTTCGCCG CTCGCCGCTG
TATTCGCTGC TGCGTGACGA AGGCGCATGC TTCGGCAGCA AGATGGGCTG GGAGCGCGCC
AACTTTTTCG CGCCCTCGCC TGACGAGGCC AGAATCGAGT ACGCGTTCGG CCAGCAGAAC
TGGCTGCCCT GGAGCGGCGC CGAACACCGC GCGTGCCGCG AAGGCGTCGC ATTGTTCGAC
ATGACGTCGT TCTCCAAATT TCTCGTCAAG GGACGCGATG CGCAAAGCGT GCTGCAAGGC
CTCGTCGCCA ACGACGTGGA CGTGCCGAAC GGCACCACCG TCTACACCGC CATGCTCAAC
GAGCGCGGCG GCTATGAATC GGACTTCACG CTCACACGCC TTGCCGACGA TCAATATCTG
CTCGTCACCG GCACCGCGCA AACCACGCGC GACTTCGACA GCATCGAAAA ATCGATTCCG
CACGACAGGC ACTGCACGCT CGTCGACGTG ACCGGCCAAT ATGCGGTGCT CGCCGTAATG
GGCCCGCGTT CGCGCGAACT GCTGCAAAGC GTGTCAAAAG CGGATTGGAG CAACGAGGCG
TTCGCATTCG GCCAGAGCCG CGAGCTCGAT CTCGGCTACG CGACGGTGCG GGCCACGCGT
CTCACCTATG TCGGCGAACT CGGTTGGGAG TTGTACGTGC CGGTGGAATT CGCGGTCGGC
GTGTACGAGA CGCTGCACGC AGCAGGTAAA GCGTTCGGCC TCGTCAACGC GGGCTATTAC
GCGATCGACT CCTTGCGCAT CGAGAAAGGG TATCGCGCAT GGGGCCGCGA ACTCACGCCG
GATACGAACC CGTTCGAAGC AGGCCTCTCG TTCGCCTGCA AGCTCGACAA GGACATTGCG
TTTCGCGGCC GCGACGCGTT GCTGAAATTG CGCGCCGAAC CGCTGCGCAG ACGCATGGTC
GTGCTGAGCG CCAACGGCGC AACGGACCGC ATGCTATGGG GCGGCGAAGC GATTCTGCGC
GACGGCAAAC CGGTGGGCTT CGTGAGTTCG GCGGCATTCG GCCACACGCT GGGCTGTCCG
GTGGCAATGG GCTACGTGAA CAATCCCGAC GGCGCAGCGG ACGCCGAGTA TCTGAACAGC
GGCAGCTATG CGATCGACGT CGCCGGCGAA CTGCTGCCGG CAACGCTGCA TCTGAAGGCG
CCTTATGATC CGCGCTCGGA ACGCGTGAAG TGTTAA
|
|---|
| Protein sequence | MSTPLPTHAR VVIVGGGIIG CSVAYHLTKL GWTDVVLLEQ GQLSCGTTWH AAGLVGQLRA
QESMTKLIRY STALYAELEA DTGLATGWKQ CGSLSVARTA ERMTQLKRTA AVARAYGVAC
DVISPREAGD LWPVMRTDDL LGAVWLPGDG KANPTDLTQA LARGARQRGA RIVENTRVTA
IHTRTAQDGK ANGAREVSGL AWRNKDGEEG TLGADIVVNC AGQWAKGVGR LCGVTVPLHS
AEHYYIVTER IAGVHPDLPV MRDPDGFIYF KEEVGGLVMG GFEPDAKPWG MNGIPENFEF
QLLPDDWDQF EILMKNALQR VPALETAQVK QFYNGPESFT PDNNFMLGEA PELRRFFVGA
GFNSMGIASA GGAGMALAEW IVAGEPTMDL WPVDIRRFAR FNGNDTWLHD RVKETLGLHY
AMPWPNRELD SARPFRRSPL YSLLRDEGAC FGSKMGWERA NFFAPSPDEA RIEYAFGQQN
WLPWSGAEHR ACREGVALFD MTSFSKFLVK GRDAQSVLQG LVANDVDVPN GTTVYTAMLN
ERGGYESDFT LTRLADDQYL LVTGTAQTTR DFDSIEKSIP HDRHCTLVDV TGQYAVLAVM
GPRSRELLQS VSKADWSNEA FAFGQSRELD LGYATVRATR LTYVGELGWE LYVPVEFAVG
VYETLHAAGK AFGLVNAGYY AIDSLRIEKG YRAWGRELTP DTNPFEAGLS FACKLDKDIA
FRGRDALLKL RAEPLRRRMV VLSANGATDR MLWGGEAILR DGKPVGFVSS AAFGHTLGCP
VAMGYVNNPD GAADAEYLNS GSYAIDVAGE LLPATLHLKA PYDPRSERVK C
|
|---|
| |