| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_4948 |
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| Symbol | |
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| ID | 6277932 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | + |
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| Start bp | 1082890 |
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| End bp | 1084050 |
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| Gene Length | 1161 bp |
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| Protein Length | 386 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 642616034 |
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| Product | porin Gram-negative type |
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| Protein accession | YP_001888682 |
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| Protein GI | 187919651 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3203] Outer membrane protein (porin) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.0530377 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.0846854 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACAAGC AAGTGTTCGC GCTAGCTGTC TCCACCGCCT TGTCCGCCGC TTTTGCCGCG
CCCGCCTCGG CGCAGACGAG CGTCACGCTG TATGGCGTAC TCGACGAAGG CATCAACTAC
ACCAACAATG TCGGCCGCGG CCATGTCTAT GAACTGGCGA GCGGCTATGC GCAAGGCAGC
CGCTGGGGGC TGAAAGGCGC CGAGGAACTG GGCGGCGGCT TGAAGGCGAT CTTCCAGCTG
GAAAACGGTT TTGACGTGAG TTCCGGGCGG CTCAATCAGG GCGGCCGCAT GTTCGGCCGT
CAGGCCTTCG TCGGCTTGAG CGCGAATCAG TTCGGCACCT TGACGTTCGG CCGCCAGTAC
GATTCGGTGG TCGACTATCT AGCGCAGACC ACGGCCAACG GCAACTGGGC CGGCTCGCTC
TTCTCGCATC CGTACGACAA CGACAATACC GACAACTCGT TCAGGCTCGA CAACTCGGTC
AAGTACACGA GTCCGTCGCT GTCCGGCTTC CAGTTCGGCG GTGTGTATAG CTTCAGCAAC
GACACCAACT TCGCCAACAA TCGCGCGTAC AGTTTCGGCG GCCAGTATTC CTATGGCGGA
CTGCTGGTGG CCGCGGCGTA TCTGCAGGCC GACAATCCCG GCAATGGCGC GAACGGTGCG
ATCACGGCGA ACGACGCGAG CTTCATCGCC GCCCGCATGC GCGTGTTCGG CGGCGGCATC
ACGTACACGT TCGGTCCGGC GACGGCCGGC TTCGTCTATA CCAATTCGAA TTATCTGGAT
CCGACCGGCA ACGGCTATCT CGGCGTGACG CCGCTCGTGC CGCCGGGCGT CTTGCTGAAC
TCGCTGAAGT ATCAGAACTT CGAGGTGAAC GGCAAGTATC AGATTTCGCC GATGCTATTC
GTCGGCGCGC AATACGTGTA CACGATGGAA ACCTACGACG CCTCGAGCGG CGGCGTGAAG
CCGAAAATTC ACTCGTTCGG CCTGATGGCG GATTACAACC TGTCCAAACG CACCGACGTC
TACATTCAGG GCGAGTATCA GCAGGTGACC GGCGACTCGA CCTATTCGAT TCTGGACGAT
GCCTTCAACG TCGGCACGCA GTCGCCGTCA TCGACCTCGA AGCAGGTCGT GGTGCGCGCG
GCGATCCGGC ATAAGTTTTG A
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| Protein sequence | MNKQVFALAV STALSAAFAA PASAQTSVTL YGVLDEGINY TNNVGRGHVY ELASGYAQGS
RWGLKGAEEL GGGLKAIFQL ENGFDVSSGR LNQGGRMFGR QAFVGLSANQ FGTLTFGRQY
DSVVDYLAQT TANGNWAGSL FSHPYDNDNT DNSFRLDNSV KYTSPSLSGF QFGGVYSFSN
DTNFANNRAY SFGGQYSYGG LLVAAAYLQA DNPGNGANGA ITANDASFIA ARMRVFGGGI
TYTFGPATAG FVYTNSNYLD PTGNGYLGVT PLVPPGVLLN SLKYQNFEVN GKYQISPMLF
VGAQYVYTME TYDASSGGVK PKIHSFGLMA DYNLSKRTDV YIQGEYQQVT GDSTYSILDD
AFNVGTQSPS STSKQVVVRA AIRHKF
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