Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_4938 |
Symbol | |
ID | 6277868 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010676 |
Strand | - |
Start bp | 1067651 |
End bp | 1069129 |
Gene Length | 1479 bp |
Protein Length | 492 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 642616024 |
Product | diguanylate cyclase |
Protein accession | YP_001888672 |
Protein GI | 187919641 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.0911189 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 0.262265 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTGGATA TCCTCCCGCG CGGCCCCGCG CCCGCCAACG ACGATTCCGA GATGTTCGAA CTCGCGCCCG TCTCGCTCTG GCTCGAAGAC TTCAGCGGCG TGCGCTCTTT GTTCGATGCA TGGCGGGCAG ACGGCGTCAC CGATCTGCGC GCGCATTTCG CCGCCAATCC GGACTGCGTC GCGCAATGCG CGCACAGCAT CCGCGTCATC AAGGTCAATC AGAAGACGCT GACGCAATTC GAGGCCGCCG ATTTCGACGC GCTCACCAGC AATCTCGCCT CGGTATTCCG CGACGACATG CTCAAGACGC ACCTGGAAGA GTTATGCCAG TTGTGGGCCG GCCAGTCGCA GTTCACCAGC CAGACGGTCA ACTACACACT CGGCGGACGC CGCCTCGACG TGTTGCTCAA GGGCGCCGTG CTGCCCGGCC ACGAGGCGCG CTGGGACCGC GTGCTGGTGT CGGTCGAAGA CATTACGGAA CTGGAAGGCG CGCGGCATCG CGTGACGCTT GCCGAGCAGT ATGTGCGCGG CCTGTTCGAA TATTCGCCGG TATCGCTCTG GGTGGAGGAT TTCAGCGCGG TCAAGCGTCT GCTCGACGAG GCGCGGGCAG CGGGCATCAA CGATTTCCGC GTGTTCACCG ACGTGCATCC CGAGTTCGTC GAGCGCTGCA TGCAGGAAAT CCACGTGCTC GACGTGAACC AGCACACGCT CGACATGTTC GCGGCGAAAG ACAAGAAAAC GCTGCTATCG CGTCTCACCG ACGTGTTCCG CGACGACATG CGTCCGCATT TCCGCGAGCA GCTGGTCGAT CTGTGGGACG GCAAGCTGTT CCAGCAGCGC GAAGTGCTCA ACTATTCGCT CGACGGCAAC GAGGTGCATG TGCACCTGCA GTTTTCCGTA CTGCCGGGCC ATGAAAAGAC CTGGGACCTG GTGCTGGTGG CGCTCACGGA CATCACGGCG CGCAAGAAGG CCGAAGCCTA CCTTGAGTTC CTTGGCAAGC ACGACGTGCT GACCAAACTG CGCAACCGCT CTTTCTACGT GGACGAACTC AACCGGCTCG AACGCAAGGG CCCGTGGCCC GTGACGATCA TCATGGCCGA TCTGAACGGT CTGAAACGCG TCAACGATCA GCTCGGCCAC GCCGCGGGCG ACGCGCTTTT GCGGCGCGCC GGCGAGGTGC TTGCCAAGGC GACCGAGACG CCGTTTCATG CGGCGCGCAT TGGCGGCGAC GAGTTCGCGA TCCTGATGCC GGACACCGAC GAGCGCGGCG GCGCCGCGAT GGTCGACGCG ATCCGGCAAC TGGTGGAACT GAACAATCAG TTTTATCCTG GCTCGCTGCT TAGCTTCTCG ATGGGCGCGG CGACCTGCCA GCGCGGCGAC CGGCTCGAAG CGGGCGTGCA GCGCGCCGAT CTGCTGATGT ACGAGGAAAA GCGCGCGACC TACGCGAGCC AGCCGGCTGG CGACCCGGCG GGCCGCTGA
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Protein sequence | MLDILPRGPA PANDDSEMFE LAPVSLWLED FSGVRSLFDA WRADGVTDLR AHFAANPDCV AQCAHSIRVI KVNQKTLTQF EAADFDALTS NLASVFRDDM LKTHLEELCQ LWAGQSQFTS QTVNYTLGGR RLDVLLKGAV LPGHEARWDR VLVSVEDITE LEGARHRVTL AEQYVRGLFE YSPVSLWVED FSAVKRLLDE ARAAGINDFR VFTDVHPEFV ERCMQEIHVL DVNQHTLDMF AAKDKKTLLS RLTDVFRDDM RPHFREQLVD LWDGKLFQQR EVLNYSLDGN EVHVHLQFSV LPGHEKTWDL VLVALTDITA RKKAEAYLEF LGKHDVLTKL RNRSFYVDEL NRLERKGPWP VTIIMADLNG LKRVNDQLGH AAGDALLRRA GEVLAKATET PFHAARIGGD EFAILMPDTD ERGGAAMVDA IRQLVELNNQ FYPGSLLSFS MGAATCQRGD RLEAGVQRAD LLMYEEKRAT YASQPAGDPA GR
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