| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_4933 |
|---|
| Symbol | |
|---|
| ID | 6277894 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | + |
|---|
| Start bp | 1064076 |
|---|
| End bp | 1064747 |
|---|
| Gene Length | 672 bp |
|---|
| Protein Length | 223 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 642616019 |
|---|
| Product | two component heavy metal response transcriptional regulator, winged helix family |
|---|
| Protein accession | YP_001888667 |
|---|
| Protein GI | 187919636 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
|---|
| TIGRFAM ID | [TIGR01387] heavy metal response regulator |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.461594 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 0.344735 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTATCC TCGTCATCGA AGACGATCCG AAAACCGGCG ACTACCTGAA GAAGGGTTTG
CGCGAGAGCG GCTATGCGGT CGATCTCGCG CGTACCGGCA CGGACGGTCT GCATATGGCG
CTCGAAAATG CGTACGACCT CGTGGTGCTG GACGTGATGC TGCCCGGCAT CGACGGCTGG
GAAATCATGC GTGCTTTGCG CACGCGGCGC GATCTGCCGG TGATTTTCCT GACCGCGCGC
GACCACGTCA GCGATCGCAT TCGCGGCCTC GAACTCGGTG CGGACGATTA TCTCGTCAAG
CCGTTTTCAT TTACGGAGCT GGTGCTGAGG ATCCGAACGC TGCTGCGCCG CGGCGTGATC
CGCGAGAGCG ATGTATTCGA AATCGCCGAC CTCAAGCTCG ACGTACTGCG CCGCAAGGTG
ACGCGCGAAG GCGTCGAGAT TCCGCTCACC AACAAGGAAT TCATGCTGCT GCATCTGCTG
GTGCGCCGTC AGGGCGAAGC GCTGTCGCGC ACGCAGATCG CCTCCGAAGT GTGGGACATG
AATTTCGACA GCGACACCAA CGTGGTCGAC GTGGCCATCA AACGGCTGCG CGCCAAAGTC
GATCATCCAT TTGAAAAGAA GCTGATCCAC ACGGTGCGCA GCATCGGCTA TACCTTCGGC
GACGGCTCAT GA
|
|---|
| Protein sequence | MTILVIEDDP KTGDYLKKGL RESGYAVDLA RTGTDGLHMA LENAYDLVVL DVMLPGIDGW
EIMRALRTRR DLPVIFLTAR DHVSDRIRGL ELGADDYLVK PFSFTELVLR IRTLLRRGVI
RESDVFEIAD LKLDVLRRKV TREGVEIPLT NKEFMLLHLL VRRQGEALSR TQIASEVWDM
NFDSDTNVVD VAIKRLRAKV DHPFEKKLIH TVRSIGYTFG DGS
|
|---|
| |