| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_4871 |
|---|
| Symbol | |
|---|
| ID | 6279485 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | + |
|---|
| Start bp | 995409 |
|---|
| End bp | 996608 |
|---|
| Gene Length | 1200 bp |
|---|
| Protein Length | 399 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642615958 |
|---|
| Product | porin Gram-negative type |
|---|
| Protein accession | YP_001888606 |
|---|
| Protein GI | 187919575 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3203] Outer membrane protein (porin) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.0668668 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAGG CATTGGCAAC TTCAGCGCTT GGACTGGTCG CCCTCGGCGC ACACGCTCAG
AGCAGCGTGA CGCTGTACGG GATCGTCGAT ACGGGTATCG GCTATCAGAG CAGCCAGACG
TCGCTCGGTT CGACCAGCGG CGGCCGTTCG GTCGTGAAGA TGGTCAACGG CATCTGGGCC
GGCAGCCGTT TCGGCCTGAA GGGCGCGGAG GATTTGGGCG GCGGCACCAA GGCGATCTTC
CAGTTGGAAG AGGGCTTTAA CAGCGCCACC GGCGCGCAGT CCGTCAGCGG TCTCGGCTTC
AACCGCCAGG CTTATGTCGG CGTGACGAAC AGCAGCTACG GTACGTTCAC GGCGGGCCGC
CAGTACACGT CGTACTACAC GATGCTCTCG CCGTACAGCC CGACCACTTG GCTGACGGGC
GCATACGGCG CGCACCCGGG CGATATCGAT TCTCTGGATA CGGTCTACCG CGTCAACAAC
TCGCTGGTGT ACACGACGCC GAGCTTCTAC GGCCTGACGG CTAGCGGCTC GTACGCGCTG
GGCGGCGTGG CTGGCAGCTT CAACGCCGGC TCGACGTGGA GCGCGGGCTT GCAATACCTG
AACGGTCCGT TCGGCATTGC GGCGGGCTTC CAGCGCATCA ACAACTCGAC GTCTGGCGGC
GGCGCATGGG GCGCGGACTC CACGGCGTCG AACAACGGCG CTCAGCCTGG CGTGTCGGGC
ATCAACAACG GCTATCAGCG CGCGCAGGCT CAACAACGCT TTGCGGTGAC GGGCGGCTAT
GCCTTCAGCC CGTCATGGGA CGTGTCGTTC TCGTACTCGA ACGTGCAATA CATTCCGGGT
ATCAACTCGC CGTTCCGCAC CACCGCGATC TTCAACACGG GCGGCGCCGT GCTGCACTTC
AAGCCTGTGA CGTCGCTGGA TCTGGCCGCG GGCTATAGCT ACACGCGCGC AACGGAAGCG
AACGGCATTT CGAGCTCGGC TCGCTATCAG CAGTTCAACC TCTCGCAGTA CTACAGCCTC
TCCAAGCGCA CTGGCCTGTA CGCGCTCGAG GCGTATCAAC GTGCAAGCGG TCAGACTCTG
GGTACGAACG GCGTCAGCAT CATCAACGCG ACGGCCGATA TCGGCGACGG CCAGAACGGC
GCGCCGTCCT CGTCGCGCAG CCAGTTTGCT GCCGGCGTGG GCATCATCCA CAAGTTCTGA
|
|---|
| Protein sequence | MKKALATSAL GLVALGAHAQ SSVTLYGIVD TGIGYQSSQT SLGSTSGGRS VVKMVNGIWA
GSRFGLKGAE DLGGGTKAIF QLEEGFNSAT GAQSVSGLGF NRQAYVGVTN SSYGTFTAGR
QYTSYYTMLS PYSPTTWLTG AYGAHPGDID SLDTVYRVNN SLVYTTPSFY GLTASGSYAL
GGVAGSFNAG STWSAGLQYL NGPFGIAAGF QRINNSTSGG GAWGADSTAS NNGAQPGVSG
INNGYQRAQA QQRFAVTGGY AFSPSWDVSF SYSNVQYIPG INSPFRTTAI FNTGGAVLHF
KPVTSLDLAA GYSYTRATEA NGISSSARYQ QFNLSQYYSL SKRTGLYALE AYQRASGQTL
GTNGVSIINA TADIGDGQNG APSSSRSQFA AGVGIIHKF
|
|---|
| |