| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_4870 |
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| Symbol | |
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| ID | 6279085 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | + |
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| Start bp | 993958 |
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| End bp | 995310 |
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| Gene Length | 1353 bp |
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| Protein Length | 450 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 642615957 |
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| Product | TRAP dicarboxylate transporter, DctM subunit |
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| Protein accession | YP_001888605 |
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| Protein GI | 187919574 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.350221 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 0.583584 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAACTTG CCATCCTCTC CGTTAGTTTT CTCGTTTTTC TCCTTCTCGG CGTTCCTGTT
TCCTTCGGGC TCGGGCTCGC GTGCGTCCTG ACTTACCTTT ACGAAGGCTT GCCGGCGGCC
ACCGCCATGC AGTCGATGAT TTCGGGCATC AACGGCTTCT CGTTTCTCGC GGTGCCGTTC
TTCATTCTGT CCGGCGAGCT GATGCTGCAC GGTGGCATCG CGGACCGCAT CCTGCGTTTC
GCGCAAGCCA CGGTCGGGCA TTTCCGCGGC GGCCTCGGCA TGGCCAACGT GGTGGCGTGC
ACGCTGTTCG GCGGCGTCTC CGGGTCGCCC TCGGCGGATA CGTCGGCCAT GGGCGGCGTG
GTGATTCCGC TGATGAAGCG TGAAGGCTAC AGCGCGGCCT ACGCGGTCAA CGTGACGACG
CACTCGTCGC TGGCGGGCGC GCTGATGCCG ACGTCGACCA ACATGATCAT CTATGCATTC
GCGGCCCAAG GCATCACCGG CACGTTGAAT GGGCATCCGA TGAGCGGCGT GTCGATCGGC
GATCTGTTGT TTTCCGGTCT TCTCCCGGTG TTGTGGGTGA TGGGTTTCGT GCTGATCGCC
GCCTACTGGC AAGCGGTCAA ATACGGCTAT CCGCGTCGTG CCGATGGTTC GACGGAGCTG
CAGAAATTCC CCGGCTGGTA CGCCGTGGCC CGTACGTTCC TCGGTGCGTT GCCCGGCTTG
ATGGTGATCG CGATCATTCT GGTTTGCGTG GCGAAGGGCA TTGCTACGGC GACGGAAGCC
GCCGCTATCG CCGTGTTTTA TTCGCTGGTG CTGACCATCG TCGTGTATCG CTCGATGACG
ATGAAGAAGC TGTTCCACGC GCTCTCCAAG GCGGCCAAAA CCACCGGCGT GGTGCTGCTG
CTGATCGGCG TGTCGAACAT GCTGCGTTAC CAGATGGCCT ATCTGGAGAT TCCGGATGCG
ATCGAACACA TGCTCGACGG CGCGACCAGC TTGCCGTGGC TGATGCTGCT GTACATCAAC
CTGATCCAGA TTTTCCTCGG CACGTTCGTC GACATGGCGG CGCACATTCT GATCACCACG
CCGCTGTTCC TGCCGATGGC GATGCACGCC GGCGTTGGTC CCGTGCAGTT CGGCATCATG
ATTCTGCTGA ATTGCGCATT GGGTCTCGTG CATCCGCCAA TCGGCTCGGT GCAGTTTATT
GGGTGCGCGA TTGGCAATGT GTCGATTGGT GAAACTACCA AGGTGGCGTG GCCGTATTAC
CTGGCTATCT TCAGCGCGAT CAACATCGTC ACTTACGTAC CGATGTTCTC GACATGGTTG
CCTAGCCTGA TCAATGGTCA CCCGGTATTT TGA
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| Protein sequence | MELAILSVSF LVFLLLGVPV SFGLGLACVL TYLYEGLPAA TAMQSMISGI NGFSFLAVPF
FILSGELMLH GGIADRILRF AQATVGHFRG GLGMANVVAC TLFGGVSGSP SADTSAMGGV
VIPLMKREGY SAAYAVNVTT HSSLAGALMP TSTNMIIYAF AAQGITGTLN GHPMSGVSIG
DLLFSGLLPV LWVMGFVLIA AYWQAVKYGY PRRADGSTEL QKFPGWYAVA RTFLGALPGL
MVIAIILVCV AKGIATATEA AAIAVFYSLV LTIVVYRSMT MKKLFHALSK AAKTTGVVLL
LIGVSNMLRY QMAYLEIPDA IEHMLDGATS LPWLMLLYIN LIQIFLGTFV DMAAHILITT
PLFLPMAMHA GVGPVQFGIM ILLNCALGLV HPPIGSVQFI GCAIGNVSIG ETTKVAWPYY
LAIFSAINIV TYVPMFSTWL PSLINGHPVF
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