| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_4647 |
|---|
| Symbol | |
|---|
| ID | 6280203 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | + |
|---|
| Start bp | 736773 |
|---|
| End bp | 738239 |
|---|
| Gene Length | 1467 bp |
|---|
| Protein Length | 488 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642615734 |
|---|
| Product | major facilitator superfamily MFS_1 |
|---|
| Protein accession | YP_001888387 |
|---|
| Protein GI | 187919356 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.866665 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 0.46173 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCATCCC CCGATCACGC CGGGTCCGTC GCGAAGCAAA GCGGCGGCGC GGCGCATTCC
GATAGCACAG TCAATCGCAC CGTCGCGGCC GCGCCGCTCG ACGCCGGCAG CATTTCCGCG
CGTCTCGACC GGCTGCCCGC CACGCGCTCC GTCTGGAAGC TGGTGGTGTT GCTGAGCCTC
GGCTTCTTCT TCGAACTCTA CGATCTGCTG TACTCCGGGT ATGTCGCGCC AGGCCTCGTC
AAAAGCGGTC TGCTGAGCGC GACCACGCAC GGCCTGTTCG GCTCGACCGG TGTCGCAAGT
TTCATCGCGG CGCTGTTTAG CGGCCTCTTT ATCGGCACGA TCGCGTGTGG CTTTCTCGCG
GATCGCTTCG GACGTCGCGC CGTGTTCACG TATTCGCTGC TGTGGTACAC GGCGGCCAAT
GTGGTGATGG CGTTTCAGGA AACGGCGACG GGGTTGAACT TCTGGCGCTT CGTGGCAGGG
ATCGGCATCG GCGTCGAACT GGTGACGATC GGCACGTACA TTTCCGAACT GGTGCCCAAG
CAGATTCGCG GCCGCGCGTT CGCGTGCGAG CAGGCGGTCG GTTTTACGGC TGTACCGGTG
GTGGCGTTCC TGTCGTATCT GCTGGTGCCG CGCACATTGC TTGGTCTCGA CGGTTGGCGC
TGGGTCGTGC TGATCGGCGC GCATGGCGCG CTGTTCGTGT GGTGGATTCG TCGCGCGTTG
CCGGAAAGCC CGCGCTGGCT CGCACAGCAA GGACGTCTTG CCGAAGCCGA CCGCGTGATG
ACGGCGCTCG AAGCCAAAGT GCGCCGCGAA TACGGCCGCG AGTTGCCGCC GCCCGCGCCG
CCGGTGGCAG TCGCGCCGCG CGGCAGCTTC CGCGATATGT GGGTGCCGCC GTACCGCAGC
CGCACGCTGA TGATGACGAT CTTCAATATC TTCCAGACCG TTGGCTTCTA CGGCTTTGCG
AACTGGGTGC CCACGCTGCT GATCAAGCAG GGCATTACGA TCACCACGAG CCTGATGTAT
TCGAGTGTGA TCGCTTTGGC TGCGCCGGTA GGTCCGCTGA TCGGCCTTTT CATCGGTGAC
CGATTCGAGC GCAAGACAGT GATCGTGGTG ATGGCAGGTG TAAATATTGT CTGCGGCTTG
TGGTTCAGCC AGGCGTCGGG CGCGGTGTTG CTGGTGAGTC TCGGTGTGTG TCTGACGCTC
GCGGGCAACA TCATTTCGTA CAGCTACCAC GCGTATCAGA CCGAGCTTTT TCCGACCAGC
ATTCGAGCGC GCGCGGTGGG CTTTGTTTAT TCGTGGAGCC GTTTTTCCGC GATCTTCACG
GCGTTTCTGA TTGCCGCCGT GTTGAAGCAG TTTGGCACCA CTGGGGTGTT CGTCTTTATC
GCTGGCGCGA TGCTCATCGT CATGCTGGCA ATCGGCTTGA TGGGCCCGCG CACGAAGGGC
ATCGAGCTGG AAAAAATCTC GCGGTAG
|
|---|
| Protein sequence | MASPDHAGSV AKQSGGAAHS DSTVNRTVAA APLDAGSISA RLDRLPATRS VWKLVVLLSL
GFFFELYDLL YSGYVAPGLV KSGLLSATTH GLFGSTGVAS FIAALFSGLF IGTIACGFLA
DRFGRRAVFT YSLLWYTAAN VVMAFQETAT GLNFWRFVAG IGIGVELVTI GTYISELVPK
QIRGRAFACE QAVGFTAVPV VAFLSYLLVP RTLLGLDGWR WVVLIGAHGA LFVWWIRRAL
PESPRWLAQQ GRLAEADRVM TALEAKVRRE YGRELPPPAP PVAVAPRGSF RDMWVPPYRS
RTLMMTIFNI FQTVGFYGFA NWVPTLLIKQ GITITTSLMY SSVIALAAPV GPLIGLFIGD
RFERKTVIVV MAGVNIVCGL WFSQASGAVL LVSLGVCLTL AGNIISYSYH AYQTELFPTS
IRARAVGFVY SWSRFSAIFT AFLIAAVLKQ FGTTGVFVFI AGAMLIVMLA IGLMGPRTKG
IELEKISR
|
|---|
| |