Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_4418 |
Symbol | |
ID | 6279159 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010676 |
Strand | + |
Start bp | 480973 |
End bp | 482406 |
Gene Length | 1434 bp |
Protein Length | 477 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 642615511 |
Product | RND efflux system, outer membrane lipoprotein, NodT family |
Protein accession | YP_001888164 |
Protein GI | 187919133 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.641884 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 39 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACCGA TCCTTGTCAA AGTCCTGGCG AGCGCCGCCT TGCTGACGCT CGCGGCGTGC GCGGTGCAAC CGGAAACGCA CGCCGATTTG CCGCAAACCG TGAAGACGGT CGCGCCCGCC GCGTGGAATG TCGACGCGCC GCAAGACAGC GTGAGCGCCA ACGCGTGGTG GGACCAATTC GGCGACCCGG TCATGCATCA GCTGGTCGAA TCCGTGTTGA CCGGCAATCT CGATGTGCAG GCAGCGGTGG AGCGCGTCAG GCAGGCGCAG GATCTGGCGA AGCAGAATCG CGCGGCGCTG CTGCCTGAGT TGAACGCGAG CGCGACGGCG TCCGACTCGC GTCAGAACAC GCCGCCGCCG CTCGGTTATG TGCGCCAGGC CGGCGTCGGC TTGACGGCGA GCTGGACGCC CGATGTATTC GGCGGCGAAC GTCTTGCCGT GCTGGCGGCG CAGGCGCAGG TGTCGGGGCG CCAGTCGGCA TTGAACGAGG TGCGCCTCGC ACTCGCGGCG AATACCGCCG CAGCGTATAT CGATCTGCGC TGGGCGCAAT CGCAGTTGCA GATTCTGAGC GACAACGAGC AGATCCGCGC ACGCGCTTTG AAGCTCACGC AGCAGCGGCT GCACTATGGG CTGTCGACGC AACTCGACGT CGCGCGCGCG CAGAACCAGC TCCAGGATTT GCAGGCGCAG ATTCCGCGCG TGCAATCTGC GGTGCAGCAT CAATTGAGTC TGATCGCGGT GTATTCGGGG CGCACGCCGG AGAGCGTCGA CAGCCTGCTG CTCGCCAACG CACGCGATAT TCCGGTGCCC GCGCAAAGCG TGCCGCAGAT GCTGCCTTCG GAGGCGCTTC TGCAGCGTCC CGATGTGCGT ACCGCGTACG CGACGGTCGA GCAGCGCGCA GCGGAAGTGG GCGTGTCGAA AGCGCAGCGC TATCCGCAGT TCCGGCTCAA TCTCGCCGAC GGCCTGCTGG CCTCGTCGTA CCTCGGCTTG CCGACGCTGA CCGACAACCT CTTCAGCGCG GCTTTGAACG CGACGAGCCC GATCTTCAAC GCGGGCCGCA TCACCGCGAA TATCGACGCG AGCGAAAGCC GCATGCGCGA ATCGCAACTC GGTTTGCAGC AAACCATGCT GCAAGCGCTG AAGGAAATCG AGGACAACCG CAGCGATCTG GTGAGCGGCG CGGTGCAGGT GCAACGTCTC GGCGGCGCGC TCGATGCGTC GAACCAGGCG CTGCATTTGT CGAGCGAACT GTACAAGGGC GGCGCGGCGG ATTTTCTCGA TGTGCTCACC GCACAGGAGG CGTATCTGCG TGACGCGGAG TCCTTGAACC AGGCCAAGCG CGAGCATGCG CTCTCGGCGG TCGCGTTGTA CCGCTCGCTC GGCGGCGGCT GGGATGTGCC CGACGCGGTC ACGGCGGTGT CGTCGAGCAA CTGA
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Protein sequence | MKPILVKVLA SAALLTLAAC AVQPETHADL PQTVKTVAPA AWNVDAPQDS VSANAWWDQF GDPVMHQLVE SVLTGNLDVQ AAVERVRQAQ DLAKQNRAAL LPELNASATA SDSRQNTPPP LGYVRQAGVG LTASWTPDVF GGERLAVLAA QAQVSGRQSA LNEVRLALAA NTAAAYIDLR WAQSQLQILS DNEQIRARAL KLTQQRLHYG LSTQLDVARA QNQLQDLQAQ IPRVQSAVQH QLSLIAVYSG RTPESVDSLL LANARDIPVP AQSVPQMLPS EALLQRPDVR TAYATVEQRA AEVGVSKAQR YPQFRLNLAD GLLASSYLGL PTLTDNLFSA ALNATSPIFN AGRITANIDA SESRMRESQL GLQQTMLQAL KEIEDNRSDL VSGAVQVQRL GGALDASNQA LHLSSELYKG GAADFLDVLT AQEAYLRDAE SLNQAKREHA LSAVALYRSL GGGWDVPDAV TAVSSSN
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