Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_4377 |
Symbol | |
ID | 6279406 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010676 |
Strand | + |
Start bp | 434851 |
End bp | 436506 |
Gene Length | 1656 bp |
Protein Length | 551 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 642615471 |
Product | glucose-methanol-choline oxidoreductase |
Protein accession | YP_001888124 |
Protein GI | 187919093 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 41 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGCAGACC GATTCGACTT CGTCGTCGTC GGCGCGGGAT CCGCGGGTTG CGTGCTGGCG AACCGGCTTT CCGAAGGCGG CCGCTACTCG GTGTGTCTAC TCGAAGCCGG GCCGGCCGAC CGTTTCATGT GGATTCATAT CCCCATCGGC TATGGCAAGA CGATGTTTCA CCCGGTCTAC AACTGGGGCT TCTATACCGA TCCCGATCCG AACATGCACA ATCGCCGGCT CTATTGGCCG CGTGGCCGTA CGCTGGGCGG CAGCAGTTCG ATCAACGGTC TGATCTATGT GCGCGGACAA CGGGACGATT ACGACAACTG GGCGCGACTC GGCAATCGCG GCTGGAGTTG GCAAGACTGC CTGCCGTATT TCAAACGGCT GGAGCATAAC GAACTGGGCG AAGGGCCGAC GCGCGGTGTC GACGGACCGC TGTGGGCCTC GACGATCAAA CAGCGCCACG AACTGGTGGA TGCGTTTATC GAGGCATCGA ATTCGTTAGG CGTGGCAAGC ATCGACGACT TCAATACGGG CGATCAGGAA GGCGTCGGCT ACTATCAGCT GACCACGCGC CGCGGGTTTC GCTGCTCGAC GGCTGTTGCT TATCTCAAAC CCGCGCGGCA GCGCCAGAAC CTGCATGTGG AAACCGACGC GATGGCCTCG AAGATTCTTT TCGAAGGCAC CCGCGCCTGC GGCGTGCAGT ATCGGCAACA CGGCGAGTTG CGCGAAGTGC GCGCCAATCG CGAAGTGATC CTGACCGCCG GTGCATTGCA GTCCCCGCAA TTGCTGCAAC TGTCCGGCGT GGGACCGGCC GCGCTACTGC GCGAGTTCGG CATTCCCGTG GTGGCCAATC GCGCGGGCGT TGGCGAGAAT TTGCAGGACC ATCTGCAAAT CCGTCTGATC TATGAAGTGA CGAAGCCGAT CACGACCAAC GATCAACTGC GTTCATGGAC GGGCCGCGCG AAGATGGGCC TGCAATGGGC GCTGATGCGC AGCGGCCCGC TCGCGGTCGG TATCAACCAG GGTGGCATGT TCTGCCGCGC GCTGCCTGAA GAATCGGCGA CACCGGATAC CCAGTTCCAT TTCTCGACGC TGTCGGCGGA TTCCGCGGGC GGCAACGTCC ACGACTTTCC CGGTTGTACG TACTCGATCT GTCAGTTGCG CCCGGAATCG CGCGGCGCGG TGCGCATTCG CAGCGCCGAT CCGCGTGAGG CGCCGTCTAT TCAGCCCAAC TATCTGGACA CCGATCTGGA CCGGCGCACG ACCATCGCCG GCGTGCGTTT CGCGCGCCGC GTCGCGGCGG CGCAGCCGAT GGCCGGACTG ATGAAACGCG AGGTGCGGCC CGGCGCGGAC GCGCAGACTG ACGACGAACT GCTCGAGTTC TGCCGGGAGT ACGGACAGAC AATTTTCCAT CCATCTGGTA CAGCGAAGAT GGGACCGGCG GGCGATCCGC TCGCGGTGGT CGATGAACGT TTGCGCGTGT ACGGCACGCA GGGACTGCGC GTGGTCGATT GCTCGATCAT GCCGACACTC GTGTCGGGTA ATACGAATGT ACCGATCGTG ATGGTCGCTG AAAAAGCATC GGACATGATT CTGCACGACG CAAGCGGCGT CGATCGAGGT GTGGCGACGA CGCCTGCGGC GAAGGTGGCC GCTTGA
|
Protein sequence | MADRFDFVVV GAGSAGCVLA NRLSEGGRYS VCLLEAGPAD RFMWIHIPIG YGKTMFHPVY NWGFYTDPDP NMHNRRLYWP RGRTLGGSSS INGLIYVRGQ RDDYDNWARL GNRGWSWQDC LPYFKRLEHN ELGEGPTRGV DGPLWASTIK QRHELVDAFI EASNSLGVAS IDDFNTGDQE GVGYYQLTTR RGFRCSTAVA YLKPARQRQN LHVETDAMAS KILFEGTRAC GVQYRQHGEL REVRANREVI LTAGALQSPQ LLQLSGVGPA ALLREFGIPV VANRAGVGEN LQDHLQIRLI YEVTKPITTN DQLRSWTGRA KMGLQWALMR SGPLAVGINQ GGMFCRALPE ESATPDTQFH FSTLSADSAG GNVHDFPGCT YSICQLRPES RGAVRIRSAD PREAPSIQPN YLDTDLDRRT TIAGVRFARR VAAAQPMAGL MKREVRPGAD AQTDDELLEF CREYGQTIFH PSGTAKMGPA GDPLAVVDER LRVYGTQGLR VVDCSIMPTL VSGNTNVPIV MVAEKASDMI LHDASGVDRG VATTPAAKVA A
|
| |