Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_4291 |
Symbol | |
ID | 6278937 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010676 |
Strand | - |
Start bp | 339621 |
End bp | 340772 |
Gene Length | 1152 bp |
Protein Length | 383 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 642615385 |
Product | porin Gram-negative type |
Protein accession | YP_001888038 |
Protein GI | 187919007 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3203] Outer membrane protein (porin) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.407078 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 0.139177 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAAAA CCCTCATCGC AGCAGGTCTC CTCAGCGCGG TTGCCATCAG CGCCCATGCA CAGAGCAGCG TGACCTTGTA CGGCACGCTG GACGCAGGCC TCGTCTACTC GAACAACCAG GGCGGCCATA GCAACTGGCA GCAAGGCAGC GGCTCGGTGT CGAACACCTA CTTCGGGCTG CGCGGCAGTG AAGACTTCGG CGGCGGCCTG CATGCGATCT TCACGTTGGA GAACGGCTTC AACCTGAATA ACGGGCAGAA CACGGAAAGC AACACGATGT TCAACCGTCA GGCCTTCGTC GGTCTGCAGA GCGATCAGTA CGGTGCGCTG ACGCTTGGCC GTCAATACGA CTCCGTGGTC GACTACCTGG CGCCGCTGTC CGAAGCAGGC GCGGGCTACG GCAACAACTT GGCGGCTCAC CCGCTCGATA ACGACAACCT CGACAACTCG TTCTCGATCA AGAACGCCGT CAAGTACACG AGCGCGAATT ACGCGGGTCT GAAGTTCGGC GGCCTGTATG GCTTCAGCAA CTCGGCCGGC GATTTCTCCA ACAACCGCGC GTGGAGCGTC GGCGCTTCGT ACGACAACGG TCCGTTGAGC GTTGCCGCCG CTTACCTGCA ACTGAACCAG TCGGGCAGTT CTAACCTGAG CGGCGCGGTG TCGCAAGGCG ACGGCACCGC GGCGGTCGCG GCCAATCTGC AACGCACGTA CGGCGCGGGC ATCAATTACA CGTACGGCCC GGCAACGGTC GGCTTCGTCT ATACGCATAC GCAGCTCGAC GGCATCACCG GCGTGGACGT CGGCGGCACG ACGCTGCCTG GCGTCGCCGG CACAAACCTG CACCTGGACA ACTACGAAGT GAACGGCCGC TATGCGCTGA CGCCGGACCT CAGCCTCGCG GCGTCGTACA CGTTCACCGA CGGCAAGATG TCCGGCTCGA ACGGCTCGGG CGATCCGAAA TGGCACACGG TATCGCTGCA AGGCGACTAC TCGCTCAGCA AGCGCACCGA TGTGTACGTG GAAGGTGTGT ATCAGCATGC CTCGGGCGAA CTCGGCAACT TCGGTTCGAA TGTCGCGGCG ATCAACACGC TCGCGCCATC GTCGACCGGC AATCAGGTGG CGGCGGCAGT CGGCTTGCGT CACCGCTTCT AA
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Protein sequence | MKKTLIAAGL LSAVAISAHA QSSVTLYGTL DAGLVYSNNQ GGHSNWQQGS GSVSNTYFGL RGSEDFGGGL HAIFTLENGF NLNNGQNTES NTMFNRQAFV GLQSDQYGAL TLGRQYDSVV DYLAPLSEAG AGYGNNLAAH PLDNDNLDNS FSIKNAVKYT SANYAGLKFG GLYGFSNSAG DFSNNRAWSV GASYDNGPLS VAAAYLQLNQ SGSSNLSGAV SQGDGTAAVA ANLQRTYGAG INYTYGPATV GFVYTHTQLD GITGVDVGGT TLPGVAGTNL HLDNYEVNGR YALTPDLSLA ASYTFTDGKM SGSNGSGDPK WHTVSLQGDY SLSKRTDVYV EGVYQHASGE LGNFGSNVAA INTLAPSSTG NQVAAAVGLR HRF
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