Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_3938 |
Symbol | |
ID | 6282048 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010681 |
Strand | + |
Start bp | 4413383 |
End bp | 4414600 |
Gene Length | 1218 bp |
Protein Length | 405 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 642623525 |
Product | general secretion pathway protein F |
Protein accession | YP_001897549 |
Protein GI | 187925907 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1459] Type II secretory pathway, component PulF |
TIGRFAM ID | [TIGR02120] general secretion pathway protein F |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 0.147565 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCGGCAT TTCGTTTCGA AGCAATCGAC GCGACGGGCA AGGCGCAAAA AGGCGTGCTC GACGCCGACA GCGCGCGCGG CGCGCGGACC AATCTGCGCT CGCAAGGACT GACGCCGCTC GTCGTAGAGC CGGCGGCTAC GCGCACGCGC GGCGAGCGCA ATCAACGGCT GTCGCTAGGG CGGCGTCTGT CGCAACGCGA GCAGGCGATC CTGACGCGCC AGCTCGCCAG CCTGCTGATC GCGGGCCTGC CGCTCGACGA AGCGCTCGCG GTGCTCACGG AGCAATCGGA GCGCGACTAC ATTCGCGAGC TGATGGCGTC GATTCGCGCG GAAGTGCTCG GCGGCCACTC GCTGGCCAAT GCGCTGACGC AGCATCCGAA AGACTTCCCC GAGATTTATC GCGCGCTGGT CGCGGCCGGT GAACATACCG GCAAGCTCGG CCTCGTGCTG TCGCGGCTCG CCGACTACAT CGAGCAACGC AACGCGCTGA AGCAGAAGAT CGTGCTCGCG TTCACGTACC CCACCATCGT CACGATCATC GCGTTCGGCA TCGTCACGTT TCTGTTGAGC TATGTGGTGC CGCAGGTGGT GAACGTGTTC GCCAGCACCA AGCAGCAACT GCCCTTCCTC ACCATCATGA TGATGGCGCT TTCCGGGTTC GTGCGGAACT GGTGGTGGGC GATGCTGATC GGCGTGATCG TGCTGGTGTA TCTGGTGCGC TCGATTCTCA GGCAACCCGG CCCGCGTCTC GCGTTCGACC GGTGGCTGCT CACCGCACCG CTGCTCGGCA AACTCGTGCG CGGCTACAAC ACCGTGCGCT TTGCCAGCAC GCTCGGCATT CTCACCGCGG CCGGCGTGCC GATTCTGCGC GCGCTGCAAG CCGCCGCCGA AACGCTCAGC AACAACGCGA TGCGCGAGAA CATCGACGAT GCGATCGTGC GTGTGCGCGA AGGCACGTCG CTGTCACGCG CGCTCGGCAA CACGAAGACG TTTCCGCCCG TGCTGGTGCA CCTGATCCGT TCGGGCGAAG CGACCGGCGA CGTGACCACG ATGCTCGACC GCGCGGCCGA CGGTGAAGCC CGCGAACTCG AACGCCGCAC GATGTTCCTG ACGAGTCTGC TGGAGCCGTT GCTGATTCTG GCGATGGGGG GAGTGGTGCT GGTGATCGTG CTGGCAGTGA TGCTGCCGAT CATCGAATTG AACAACCTGG TGCAGTAG
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Protein sequence | MPAFRFEAID ATGKAQKGVL DADSARGART NLRSQGLTPL VVEPAATRTR GERNQRLSLG RRLSQREQAI LTRQLASLLI AGLPLDEALA VLTEQSERDY IRELMASIRA EVLGGHSLAN ALTQHPKDFP EIYRALVAAG EHTGKLGLVL SRLADYIEQR NALKQKIVLA FTYPTIVTII AFGIVTFLLS YVVPQVVNVF ASTKQQLPFL TIMMMALSGF VRNWWWAMLI GVIVLVYLVR SILRQPGPRL AFDRWLLTAP LLGKLVRGYN TVRFASTLGI LTAAGVPILR ALQAAAETLS NNAMRENIDD AIVRVREGTS LSRALGNTKT FPPVLVHLIR SGEATGDVTT MLDRAADGEA RELERRTMFL TSLLEPLLIL AMGGVVLVIV LAVMLPIIEL NNLVQ
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