Gene Bphyt_3887 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphyt_3887 
SymbolputA 
ID6282405 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phytofirmans PsJN 
KingdomBacteria 
Replicon accessionNC_010681 
Strand
Start bp4348896 
End bp4352825 
Gene Length3930 bp 
Protein Length1309 aa 
Translation table11 
GC content65% 
IMG OID642623474 
Producttrifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 
Protein accessionYP_001897498 
Protein GI187925856 
COG category[C] Energy production and conversion
[E] Amino acid transport and metabolism 
COG ID[COG0506] Proline dehydrogenase
[COG4230] Delta 1-pyrroline-5-carboxylate dehydrogenase 
TIGRFAM ID[TIGR01238] delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain) 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.471061 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones40 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTAGCA CCACCCTTGG CGTCAAGGTC GACGACCTCC TGCGTTCCCG GCTGAAAGAT 
GCCGCTACCC GTCTTGAACG CACTCCGCAC TGGCTCATCA AGCAGGCCAT CTTCGCGTAC
CTCGAAAAGA TCGAGCACGG TCAGTTGCCG CCCGAACTGT CGGGCGTGAC AGGCTCGGCG
GATCTTGCCG ATGGCGCCTC GGTCGAGCAG GAAGAAGACG GCGCGTCGCA CCCGTTCCTC
GAGTTCGCGC AAAACGTGCA GCCGCAATCG GTGCTGCGCG CGGCGATCAC GGCCGCTTAC
CGCCGTCCCG AGCCGGAATG CTTGCCGTTC CTGGTCGGCC AGGCGCGTTT GCCGGCGAAC
CTCGCGGGCG ATGTGCAGAC AATGGCCGGC AAGCTCGTCG AAACGCTGCG CACCAAGAGC
AAGGGCGGTG GGGTCGAAGG TCTGATCCAC GAGTTCTCGC TGTCGAGCCA GGAAGGCGTG
GCGCTGATGT GCCTCGCCGA AGCGCTACTG CGCATTCCTG ACCGCGCCAC GCGCGACGCG
CTGATCCGCG ACAAGATCAG CAAGGGCGAC TGGAAATCGC ACATGGGCCA GGCGCCGTCG
ATGTTCGTCA ACGCCGCGAC GTGGGGCTTG ATGATCACCG GCAAGCTGGT GACGACCAAT
AGCGAAACGA GCCTTTCGTC GGCGCTTACG CGTTTGATCG GCAAGGGCGG TGAGCCGCTG
ATCCGTAAGG GCGTCGACAT GGCGATGCGC CTGATGGGCG AGCAGTTCGT CACCGGAGAG
AACATCTCCG AAGCGCTGGC CAATAGCCGC AAATACGAAG CACGCGGCTT CCGCTACTCG
TACGACATGC TCGGCGAAGC GGCCACCACC GAAGCCGACG CGCAGCGCTA CTACGCCTCG
TACGAACAGG CGATCCACGC GATCGGCAAG GCCGCCGGCG GCCGTGGCAT CTACGAAGGC
CCGGGCATTT CGATCAAGCT TTCCGCGCTG CATGCACGCT ACTCGCGTTC GCAGCAGGAG
CGCACGATGA GCGAATTGCT GCCGCGCGTG CGCTCGCTGG CGATCCTCGC GCGCCGCTAC
GACATTGGCC TCAACATCGA CGCCGAAGAA GCCGACCGTC TGGAAATCTC GCTCGATCTG
CTCGAAGCGC TGTGCTTCGA TCCGGAGCTG GCCGGCTGGA ACGGCATCGG CTTTGTGGTG
CAGGCGTATC AGAAGCGTTG CCCGTTCGTG ATCGATTACA TCATCGATCT GGCGCGCCGG
AGCCGTCACC GCATCATGGT GCGCCTCGTG AAGGGCGCGT ACTGGGATAC CGAAATCAAG
CGCGCGCAAG TGGACGGCCT CGAAGGCTAT CCGGTGTACA CGCGCAAGAT CTACACGGAC
GTGTCGTACC TCGCTTGTGC CAAGAAACTG CTGAGCGCGC CCGACGCGGT CTATCCGCAG
TTCGCCACGC ACAACGCCCA CACGCTCTCG GCGATCTATC ACCTCGCGGG CAACAACTAC
TATCCCGGCC AGTACGAGTT CCAGTGCCTG CACGGCATGG GCGAGCCGCT GTACGAGGAA
GTCACCGGCC GCGACAAGCT GAACCGTCCG TGCCGCGTGT ACGCGCCGGT CGGCACGCAT
GAAACGCTGC TCGCGTACCT CGTGCGCCGT TTGCTGGAAA ACGGCGCGAA CACGTCGTTC
GTGAATCGTA TTGCCGATGA AAACGTCGCG ATCAAGGACC TGATCGCCGA CCCGGTCGAT
GAAGCCTCCA AGATCGTGCC GCTCGGCGCG CCGCACGCGA AGATTCCGCT GCCGCGCAAT
CTGTACGGCG CCGAGCGTCT TAATTCGATG GGCCTCGATC TGTCGAACGA GCATCGTCTG
GCGTCGCTGT CGTCGGCGTT GCTGGCGAGC GCGCATCATC CGTGGCGCGC CGCGCCGATG
CTGGAAGACA ACGAAATCGC CGTGGGCGTC GCGCGCGATG TGCGCAACCC GGCGGATCAT
CGTGACCTCG TCGGCACGGT CGTCGAAGCG ACCCCGGAAC ATGTGAGCGC CGCGCTGGCG
CATGCTGTCG CCGCGGCGCC GATCTGGCAA GCCACGCCGG TCGATGCGCG CGCCGATTGC
CTCGCGCGTG CCGCCGATCT GCTCGAAGCG CAGATGCATA CGCTGATGGG TTTGGTGGTG
CGTGAAGCGG GCAAGTCGCT GGCCAATGCG GTCGCGGAAA TCCGCGAAGC AATCGACTTC
CTGCGCTACT ACTCCACGCA GATTCGCGAC GAGTTCTCCA ACGACACGCA TCGCCCGCTC
GGTCCGGTGG TCTGCATCAG CCCGTGGAAT TTCCCGCTGG CGATTTTCAT GGGCCAGGTG
GCCGCGGCGC TCGCTGCCGG CAACACGGTG CTCGCGAAGC CGGCCGAACA AACGCCGCTG
ATCGCCGCGC AAGCCGTGCG CATTCTGCGC GAAGCCGGCG TCCCGGCGGG CGCAGTGCAA
CTGCTGCCGG GCAATGGCGA AACGGTCGGC GCTGCATTGG TCGCCGATCC GCGCACGCGC
GCCGTGATGT TCACCGGTTC CACCGAAGTC GCGCGCCTCA TCAACAAGAC GCTCTCGGGC
CGCCTCGATC CGGACGGCAA GCCGATTCCG CTGATCGCCG AAACGGGCGG CCAGAATGCG
ATGATCGTCG ACTCGTCGGC GCTCGCTGAA CAGGTGGTCG CGGACGTGCT GCAATCGTCT
TTCGACTCCG CCGGTCAACG GTGTTCCGCG TTGCGCGTTC TTTGTCTGCA GGACGATGTC
GCGGACCGCA CGCTGGAGAT GCTGACGGGC GCGATGCGCG AACTGGCTGT GGGCAATCCT
GATCGTCTGT CGATCGACGT CGGCCCGGTG ATCGACCTCG ACGCGAAACG CGGTATCGAC
GCGCACGTCG CGACGATGCG CGAGAAAGGC CGCAAGGTCG AGCAATTGCC GATGCCCGAC
GGTTGCGCGC AAGGCACTTT CGTTCCGCCG ACGCTGATCG AACTCGACAG CATCGACGAA
CTGAAGCGCG AAGTGTTCGG CCCGGTGTTG CACGTGGTGC GTTACCGCCG CAGCCAGCTC
GACAAGCTGC TCGAACAGAT CCGCACGACG GGCTACGGCC TGACGCTCGG CATCCATACG
CGGATCGACG AAACCATCGC TCACGTGATC AGCCGCGCGC ATGTCGGCAA CATTTATGTG
AACCGCAACG TGATCGGCGC GGTGGTGGGT GTGCAGCCGT TCGGCGGCGA AGGTTTGTCG
GGCACGGGGC CGAAAGCGGG CGGCGCGCTG TATCTGCAGC GTCTGCTGGC GACGCGTCCG
GCCGGGTTGC CGAAGTCGCT CGCGCAGGCA TTGGTTGCGG ATGCACCGAA CGCAGCCGAA
AACAGCGACA ATCCGTCCGC TGCATTGACG GCTTATCGCG ATTGGCTGAT CGCCGAGCAA
CAGCCGGTGC TGGCCGCGCG CTGCGACGGC TATCTGTCGC ATATGCCGGC GGGCGCCACG
GCGGTACTGT CGGGACCGAC TGGCGAGCGC AACACGTACA CGTTGGGCCC ACGCGGCACG
GTGCTGTGTA TTGCGTCGAC GGCGAGCGGC GCGCGCGTGC AGTTTGCCGC GGCGCTGGCT
ACGGGAAATC GCGCGCTGTT CGAAGGCGCG GCTGGTGAAC AATTGGTGGC GCAGTTGCCC
GCGTCGCTGA AATCACGTGC GAGCGTGAAG AAGAGCGCGG ATGCGACTTT CGACGCCGTG
CTGTTCGAAG GTGATAGCGA CGAGCTGCTG GCGCTGGTCA AGGAGGTCGC GAAGCGTCCG
GGCCCGATCG TGTCGGTGCA GGGCGTGGCG GCACGCGCGC TGGAAAGCGG CGACGAAGAT
TACGCGCTCG AGCGTCTGTT GACGGAACGT TCGGTCAGCG TGAATACGGC AGCAGCTGGC
GGTAATGCGA ATTTGATGAC GATCGGTTGA
 
Protein sequence
MASTTLGVKV DDLLRSRLKD AATRLERTPH WLIKQAIFAY LEKIEHGQLP PELSGVTGSA 
DLADGASVEQ EEDGASHPFL EFAQNVQPQS VLRAAITAAY RRPEPECLPF LVGQARLPAN
LAGDVQTMAG KLVETLRTKS KGGGVEGLIH EFSLSSQEGV ALMCLAEALL RIPDRATRDA
LIRDKISKGD WKSHMGQAPS MFVNAATWGL MITGKLVTTN SETSLSSALT RLIGKGGEPL
IRKGVDMAMR LMGEQFVTGE NISEALANSR KYEARGFRYS YDMLGEAATT EADAQRYYAS
YEQAIHAIGK AAGGRGIYEG PGISIKLSAL HARYSRSQQE RTMSELLPRV RSLAILARRY
DIGLNIDAEE ADRLEISLDL LEALCFDPEL AGWNGIGFVV QAYQKRCPFV IDYIIDLARR
SRHRIMVRLV KGAYWDTEIK RAQVDGLEGY PVYTRKIYTD VSYLACAKKL LSAPDAVYPQ
FATHNAHTLS AIYHLAGNNY YPGQYEFQCL HGMGEPLYEE VTGRDKLNRP CRVYAPVGTH
ETLLAYLVRR LLENGANTSF VNRIADENVA IKDLIADPVD EASKIVPLGA PHAKIPLPRN
LYGAERLNSM GLDLSNEHRL ASLSSALLAS AHHPWRAAPM LEDNEIAVGV ARDVRNPADH
RDLVGTVVEA TPEHVSAALA HAVAAAPIWQ ATPVDARADC LARAADLLEA QMHTLMGLVV
REAGKSLANA VAEIREAIDF LRYYSTQIRD EFSNDTHRPL GPVVCISPWN FPLAIFMGQV
AAALAAGNTV LAKPAEQTPL IAAQAVRILR EAGVPAGAVQ LLPGNGETVG AALVADPRTR
AVMFTGSTEV ARLINKTLSG RLDPDGKPIP LIAETGGQNA MIVDSSALAE QVVADVLQSS
FDSAGQRCSA LRVLCLQDDV ADRTLEMLTG AMRELAVGNP DRLSIDVGPV IDLDAKRGID
AHVATMREKG RKVEQLPMPD GCAQGTFVPP TLIELDSIDE LKREVFGPVL HVVRYRRSQL
DKLLEQIRTT GYGLTLGIHT RIDETIAHVI SRAHVGNIYV NRNVIGAVVG VQPFGGEGLS
GTGPKAGGAL YLQRLLATRP AGLPKSLAQA LVADAPNAAE NSDNPSAALT AYRDWLIAEQ
QPVLAARCDG YLSHMPAGAT AVLSGPTGER NTYTLGPRGT VLCIASTASG ARVQFAAALA
TGNRALFEGA AGEQLVAQLP ASLKSRASVK KSADATFDAV LFEGDSDELL ALVKEVAKRP
GPIVSVQGVA ARALESGDED YALERLLTER SVSVNTAAAG GNANLMTIG