Gene Bphyt_3746 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphyt_3746 
Symbol 
ID6282774 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phytofirmans PsJN 
KingdomBacteria 
Replicon accessionNC_010681 
Strand
Start bp4193821 
End bp4195629 
Gene Length1809 bp 
Protein Length602 aa 
Translation table11 
GC content64% 
IMG OID642623333 
ProductTPR repeat-containing protein 
Protein accessionYP_001897358 
Protein GI187925716 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3063] Tfp pilus assembly protein PilF 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.824926 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAACACC GATCCCAGCC TGATCGCGTG CGCACCGAAC CGTCGCACGC CGCTTACCTT 
GCCTCATTGA TCGACGCCGC GCTCGAAGCG CATCAAGCGG GCCGGCTCGA CGCCGCCGAA
TCCCTCTATC GCGAAACCCT CGTGCTCGAT CCTGCTCATA CGGGAGCGCT GCACTACTTC
GGCGTGCTGC AATTCCAGCG CGGCGATCAC GACACGGCCG CGAGCCTGAT GAGCCGCGCA
CTCAAACTCG ACCGTCACGA TGCCGCCTGC TGGAGCAACC GCGGACTCGT GGCCGCCGCA
CTCGGCCACC TGGACGAAGC GATGATCTGC TATGACCAGG CGCTGCAACT CCAGCCTGAT
TTCGCCGATG CGCACAACAA CTTCGGCGTC GCACTGCAAG CGCAAGGCGA TCTCAGTGAA
GCGATCGAGC AGTATCGATT GGCGCTGGCC TCGAACCCCA TGCTGCTCGA CGCACGTCTG
AACCTCGGCA CGGCGCTCAG CAAACTTGGG CACTTCGACG ACGCGTTGGC GTGCTATCGG
GAGGCCTTGT CGCTCGATCC GACATCGGCG GAAGCGCACT TCAATGTGGG CAATGCGCAC
AAAGCGCGAG GCGATCACGG CGCGGCAATC GCCAGCTTCG AGCGAGCGCT TTCGCTGCGC
GCGAATTACA CCGAGGCGCA CATCAATCTG GGTAGCCTGA TCGGCAAGCT CGGCGACTAC
GCGGGCGCTG AAGCGCATTA CCGGCGCGCG GTCGCGCTCA AACCGAATCC GACTCACCTC
GTGTGTCTGG GCGGATCGCT CGGCGCGCAA GGTCGGCTGG ACGAAGAGGA AGGCTTTTAT
CGCCAGGCGC TCGCACTCGA TCCGCACTAC GCGGACGCGC ATCAGAATCT CGCGTGGCTG
TTGCTCAAAC GCGGCGACTA TCGACAGGGC TGGGCCGAAT TCGCGCTGCG CTGGCGCAAG
AGCGACTATG ACGCGATCGC GGTGCCGGGC GTTGCTGAAT GGCGTGGCGA GTCGTTAGAG
GGGCGCCGTC TGTTGCTGGT CGGCGAGCAG GGTTTCGGTG ACCATTTCCA GTTCCTGCGC
TTTGCGGGCG TACTCGCCCA GCGCGGTGCA ACGGTCGAGC TGTGCGTGCG CGAGCCGCTG
CTGCCTTTGG TCGAACGCAT CGCGGGCGTG CATCGCGCAT TCAGCGGCAA ACCCGACGGC
CAATACGATT TCTGGGTGCC GATGATGAGC GTGCCCTCGT GTATCGGTTT GGATCGTCTT
GCCGACATTC CCGCAGAAGT GCCCTACCTG TTCGCCGACA AAACGAAGAT CAAGGCATGG
CGCAAACGTC TCGGCGCGAC CGACAAGTCG AAGCGCAAGG TGGGACTGGT CTGGGCCGGC
AGTCCTGGAT TCGGCAACGA CCGCTACCGC TCGATGCAAC TAGCCGAACT AGACGCGCTC
AGCGACATTG AAGACATTGC CTGGTACGCG CTGCAGAAAG GCCCCGCGCA TGCGCAACTG
GCCGAGGCGC CGCCCGCTTT CCGTGCCCAC GATTTCACAG CCGAGCTGAA CAGCTTCGAA
GACACGGCCG CGTTGATCAT GAACCTGGAT CTGGTGATCG CCGTGGACAC CGGCGTCGCG
CATCTGGCCG GAGCGTTGGG CAAACCGGTG TGGTTGATGT TGCCCGCCAA TTCGGACTGG
CGCTGGCTCG AAGCACGCAG CGACTCACCG TGGTATCCAG GAATGAGATT GTTCCGGCAG
CCGATGCTAG GAGATTGGGC GCCGGTGGTC GAGGACGTGA CCGGCGCACT GCGCGAAGGC
GGGATCTAA
 
Protein sequence
MEHRSQPDRV RTEPSHAAYL ASLIDAALEA HQAGRLDAAE SLYRETLVLD PAHTGALHYF 
GVLQFQRGDH DTAASLMSRA LKLDRHDAAC WSNRGLVAAA LGHLDEAMIC YDQALQLQPD
FADAHNNFGV ALQAQGDLSE AIEQYRLALA SNPMLLDARL NLGTALSKLG HFDDALACYR
EALSLDPTSA EAHFNVGNAH KARGDHGAAI ASFERALSLR ANYTEAHINL GSLIGKLGDY
AGAEAHYRRA VALKPNPTHL VCLGGSLGAQ GRLDEEEGFY RQALALDPHY ADAHQNLAWL
LLKRGDYRQG WAEFALRWRK SDYDAIAVPG VAEWRGESLE GRRLLLVGEQ GFGDHFQFLR
FAGVLAQRGA TVELCVREPL LPLVERIAGV HRAFSGKPDG QYDFWVPMMS VPSCIGLDRL
ADIPAEVPYL FADKTKIKAW RKRLGATDKS KRKVGLVWAG SPGFGNDRYR SMQLAELDAL
SDIEDIAWYA LQKGPAHAQL AEAPPAFRAH DFTAELNSFE DTAALIMNLD LVIAVDTGVA
HLAGALGKPV WLMLPANSDW RWLEARSDSP WYPGMRLFRQ PMLGDWAPVV EDVTGALREG
GI