Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_3503 |
Symbol | |
ID | 6284488 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010681 |
Strand | - |
Start bp | 3946941 |
End bp | 3948731 |
Gene Length | 1791 bp |
Protein Length | 596 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 642623082 |
Product | peptidase M61 domain protein |
Protein accession | YP_001897117 |
Protein GI | 187925475 |
COG category | [R] General function prediction only |
COG ID | [COG3975] Predicted protease with the C-terminal PDZ domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.835737 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.00306179 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAAGCCGA TCCGCTACAC CATCGTTCCC AAGCAACCCG CCGCCCACCT GTTCGAAGTC ACCGTGACCG TCGCCGATCC CGATCCGGCC GGCCAGCGTT TCATGCTGCC GGTGTGGATT CCGGGCAGCT ACATGGTGCG CGAGTTCGCG CGCAACATCG TCACGCTGCG CGCCTTCAAC GACGCGGGCC GCAAGGTGCG TGTCGAAAAG ACCGACAAGC ACACATGGCA AGCCGCGCCG GTCAAGGGCG CGCTGACGCT GCGCTACGAG GTCTATGCAT GGGATCTGTC GGTGCGCGCG GCGCATCTCG ACGATACGAC GGGCTTTTTC AACGGCACGA GCGTGTTTCT CTCGCCGCTC GGTCACGAAG AGGCGCAGTG CGTGGTCGAC ATTCAGAAGC CCGAGGGCGC GGCGTATCGC AACTGGCGTG TCGCGACCGC GTTGCCGGAA GCGCGTGGTA CGAAGCGGTA TGGCTTCGGC GAGTATCGCG CGCAGAACTA CGACGAACTG ATCGATCATC CGGTCACACT CGGCGAATTC GCACTAGCGA CGTTCAAGGC GCATGGCGTG CCGCACGACA TCGTGATCGC CGGGCGCGTG GTTGGCCTGG ACATGGCGCG TCTGTCCGCC GACCTGAAGC GCATTTGCGA AGCGCAGATC GCGTTGTTCG AGCCGAAGTC GAAGAAGGCG CCGGTTGATC GCTACGTGTT CATGACCCAA GCCGTCACCG ATGGTTATGG CGGCCTCGAA CACCGCGCTT CGACCGCGCT GATCTGCAAT CGCGGCGATC TGCCGGTGGA AGGCCGCGAG GCGCTTACCG AAGGCTATCG AACCTACCTC GGCCTGTGCA GCCACGAATA TTTCCACACC TGGAACGTGA AGCGCATCAA GCCGGCGGTG TTCGCGCCGT ACGATCTGAG CGTCGAAAAC TACACGTCGC TGCTGTGGCT GTTCGAGGGC TTCACCTCTT ACTACGACGA CCTGATCCTC GTGCGCAGCG GCCTGATCTC GCAGGACGAC TATTTCGGCA TGCTCGGCAA GGTGATCGGC GGCGTGCAGC GCGGTAGCGG GCGTCTCAAG CAGACCGTCG CCGAAAGCTC GTTCGACGCG TGGGTCAAGT ACTACCGGCA GGACGAGAAC GCGCCGAATG CGATCGTCAG CTATTACACC AAGGGCTCGC TCGTCGCGCT CGCGTTCGAT CTGACGATCC GCGCGCAAAC CAATAACCGC AAATCCCTCG ACGACGTGAT GCGTTTGCTG TGGCAGCGCT TTGGCCGCGA TTTTTATCGT GGCAAACCGG TCGGCGTCGA CGAAAACGAG ATCGAGGCGC TTTTCGCGGA AGCGACCGGC GCGAAGCTGG CCGAGCTGTT TGCCGAAGCC GTGCACGGCA CGCGCGATCT GCCGCTCGAC ACGCTGCTTG CGCCGTTCGG TGTCGACATC GCGCCCGAAT TGGACAAAAA CGGCAAGCCG TCGCTCGGCG CGCGTGTGCG CGGCGGCGCG GATTGCACGC TGGCGGCGGT TCATGACGGC AGCGCCGCGC AAAAAGCCGG ACTCTCGGCC GGCGACGTGC TGATCGCGCT CGACGGCCTG CGCGTAACCG GCTCGAATCT TGACGGGCTG CTCGCGCGCT ATCAGCCTGG CGCGAAAGTC GAGGTACACG CGTTCCGCCG CGACGAGCTG CGCACCACGC AAGTCAAGCT GGATGGGCCC GAGGTGGCAC GCTACAAGCT CACCGCCAGC GACAAGCGGC CCGCCGCGCG CAAGGCGCGT GAGCGCTGGC TGGCGAGCTG A
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Protein sequence | MKPIRYTIVP KQPAAHLFEV TVTVADPDPA GQRFMLPVWI PGSYMVREFA RNIVTLRAFN DAGRKVRVEK TDKHTWQAAP VKGALTLRYE VYAWDLSVRA AHLDDTTGFF NGTSVFLSPL GHEEAQCVVD IQKPEGAAYR NWRVATALPE ARGTKRYGFG EYRAQNYDEL IDHPVTLGEF ALATFKAHGV PHDIVIAGRV VGLDMARLSA DLKRICEAQI ALFEPKSKKA PVDRYVFMTQ AVTDGYGGLE HRASTALICN RGDLPVEGRE ALTEGYRTYL GLCSHEYFHT WNVKRIKPAV FAPYDLSVEN YTSLLWLFEG FTSYYDDLIL VRSGLISQDD YFGMLGKVIG GVQRGSGRLK QTVAESSFDA WVKYYRQDEN APNAIVSYYT KGSLVALAFD LTIRAQTNNR KSLDDVMRLL WQRFGRDFYR GKPVGVDENE IEALFAEATG AKLAELFAEA VHGTRDLPLD TLLAPFGVDI APELDKNGKP SLGARVRGGA DCTLAAVHDG SAAQKAGLSA GDVLIALDGL RVTGSNLDGL LARYQPGAKV EVHAFRRDEL RTTQVKLDGP EVARYKLTAS DKRPAARKAR ERWLAS
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