Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_3443 |
Symbol | |
ID | 6284252 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010681 |
Strand | - |
Start bp | 3874664 |
End bp | 3876400 |
Gene Length | 1737 bp |
Protein Length | 578 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 642623016 |
Product | prolyl-tRNA synthetase |
Protein accession | YP_001897057 |
Protein GI | 187925415 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0442] Prolyl-tRNA synthetase |
TIGRFAM ID | [TIGR00409] prolyl-tRNA synthetase, family II |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0201735 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.00179562 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAAAGCTT CCCGTTTCTT TATCGGTACC CTCAAAGAAG CTCCCGCCGA CGCAGAGATC GTCAGCCACA AGCTCATGGT GCGCGCCGGC ATGATCCGCC GCGTTGCCGG CGGTATCTAT AACTACCTGC CGGTCGGCCT GCGCTCGATC CGCAAGGTGG AAGCCATCGT GCGCGAAGAA ATGAACCGGG CAGGCGGTAT TGAATTGCTG ATGCCGGCAG TGCAGCCGGC CGAGTTGTGG CAGGAATCGG GCCGTTGGGA AAAGTACGGT CCCGAACTGC TGCGCTTCAA GGATCGCAGG CAGTCCGATT TCGTGATCGG ACCGACCCAC GAAGAAGTGG TCACGGATAT CGCGCGCAAT CAGATCAAGA GCTATCGCCA GCTGCCGGTG AACTTCTACC AGATCCAGAC CAAGTTCCGC GACGAGATCC GTCCGCGTTT CGGCGTGATG CGCGGCCGCG AATTCATCAT GAAAGACGCG TACTCGTTCG ACAAGGACAT GGACGGTCTG CGCGAGTCGT ATCGCAAGAT GTACGACGCG TACGTGCGCA TTTTCACGCG CCTCGGTCTG GACTTCCGCG CGGTGGCGGC GGACAACGGG TCGATTGGCG GCAGCGGTTC GCACGAATTC CACGTGATCG CCGAGACCGG TGAAGATGCG ATCGCCTACT GCCCGACCTC GGATTTCGCG GCGAACGTCG AAGCGGCCGA AGCGCTGCCG CTCTACGCGG AACGCGCGGC GCCCACCGAA GAAATGAAGA AGACTCCCAC GCCGGGCAAG GCGAAGTGCG AAGCGGTGGC CGAGCTGCTG AACATTCCGC TCGAGCGCAC GATCAAGTCG ATCATCCTCG CCACCGAAAA TGAAGGCGCC GAGCCGACCA TCTGGTTGCT GATGCTGCGC GGCGACCACG ATCTGAACGA GATCAAGGCG AGCAAGCTGC CGGGTCTGGC CGAGTTCCGC ATGGCGACCG AGGCTGAAAT CATTGAAACC TTCGGTACGC CGCCGGGTTA CCTCGGCCCG ATCGGCACGA AGAAGCCGAT CAAGGTCGTC GCGGATCGCA CGGTCGCGAA CATGAGCGAC TTCGTGGTCG GCTCGAACGA AGTGGATTAC CACACCACGG GCGTGAACTG GGGGCGTGAT CTGCCGGAGC CTGTCGTCGC CGACATTCGC AACGTGAAGA AGGGCGATCC GTCGCCGGAC GGCAAGGGCG TGCTCGACAT CTGCCGCGGT ATCGAAGTGG GCCACGTGTT CCAGCTCGGC ACCAAGTATT CCGAAGCCAT GGGCGCGACC TGCCTCGACG AAACCGGTAA GCCGCGTCCG ATGGAAATGG GCTGCTACGG GATCGGCGTG ACGCGTATCC TGGGCGCCGC GATCGAACAG AATTTCGACG ACAAAGGCAT CATCTGGCCG GAATCGATCG CGCCGTTCGA AGTCGTGCTG TGCCCGATGG GCTACGACCG CAGCGAAGCC GTGCGCGCGG AAGCCGACAA GCTTTACGCG GCGCTGGTCG AAGCGGGTAT CGACGTGATC CTCGACGACC GCGGCGAGCG CCCGGGCGTG ATGTTCGCCG ACTGGGAGCT GATCGGCGTG CCGCATCGTC TCGTGATCGG CGACCGTGGC CTGAAGGAAG GCAAGCTCGA ATACCAGGGC CGCCGCGACG CTGAAGCGAC GCTGCTGCCG GTCGAAGACG CCGCGCAAAC GGTGATCGGG AAAGTTCGCG CAGCGTTGGC GCGTTAA
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Protein sequence | MKASRFFIGT LKEAPADAEI VSHKLMVRAG MIRRVAGGIY NYLPVGLRSI RKVEAIVREE MNRAGGIELL MPAVQPAELW QESGRWEKYG PELLRFKDRR QSDFVIGPTH EEVVTDIARN QIKSYRQLPV NFYQIQTKFR DEIRPRFGVM RGREFIMKDA YSFDKDMDGL RESYRKMYDA YVRIFTRLGL DFRAVAADNG SIGGSGSHEF HVIAETGEDA IAYCPTSDFA ANVEAAEALP LYAERAAPTE EMKKTPTPGK AKCEAVAELL NIPLERTIKS IILATENEGA EPTIWLLMLR GDHDLNEIKA SKLPGLAEFR MATEAEIIET FGTPPGYLGP IGTKKPIKVV ADRTVANMSD FVVGSNEVDY HTTGVNWGRD LPEPVVADIR NVKKGDPSPD GKGVLDICRG IEVGHVFQLG TKYSEAMGAT CLDETGKPRP MEMGCYGIGV TRILGAAIEQ NFDDKGIIWP ESIAPFEVVL CPMGYDRSEA VRAEADKLYA ALVEAGIDVI LDDRGERPGV MFADWELIGV PHRLVIGDRG LKEGKLEYQG RRDAEATLLP VEDAAQTVIG KVRAALAR
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