| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_3394 |
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| Symbol | |
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| ID | 6283706 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010681 |
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| Strand | + |
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| Start bp | 3824566 |
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| End bp | 3825321 |
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| Gene Length | 756 bp |
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| Protein Length | 251 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642622968 |
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| Product | 16S ribosomal RNA methyltransferase RsmE |
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| Protein accession | YP_001897009 |
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| Protein GI | 229597247 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1385] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR00046] RNA methyltransferase, RsmE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.000275016 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.00394981 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGTATTT TTCTGATGCC TCGCTTTTTC GTCGGTACGC CTCTGCAGCC CGAGGACGTC
TTGCCGCTTC CCGATGACGT CGTTCGGCAC GTGCTCGTGC TGCGCCTGCA GCCAGGCGAT
TCGATCGTCC TTTTCAACGG CGAAGGCGGC GAATACAGCG CCGAACTCGT CGAAGTCGAA
AGGCGCTCGG CCATGGTGAA AATCCGCGAA TTCCGCGATA TCGAGGTCGA GGCGCCCTAT
CGCCTTACGC TCGCGCAGGG CATTGCCGGC GGCGACAAGA TGGACTGGCT GATCGAAAAA
GCCGTCGAAC TGGGCGCGTC CAGCTTCGTG CCGTTGACCA CCACGCGCAG CGTCGTGCGC
CTCTCCGGCG ATCGCGCGCA GCGGCGCCAC GCGCATTGGC AAGGCATCGT GCGGGCGTCG
TGTGAACAGT GCGGGCGCAA TCGCCTGCCG GAAGTGATGC CGGTGCGCGA GATCGCCACC
TGGCTCGGCT CGATGCCCCG CACGCCCGAG GAAGGCGACC TGCGCATTCT GCTTTCGCCG
CGCGCGAGCA TCAGCTTTTC CGCGTTGCCC TCCGAACCGC CGAAAGGACG CGTGACGGTG
CTGGTGGGCC CGGAAGGCGG CTTTTCAGCG ACGGAAGAAG CCGCCGCGGC CGCGCACGGT
TTCACCGCCG TCGGCCTCGG CCCGCGCGTG ATGCGCACCG AAACCGCCGG CATCGCCGTT
CTCTCGGCGC TGGCGGCCGG CTGGGGCGGC TGGTAA
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| Protein sequence | MSIFLMPRFF VGTPLQPEDV LPLPDDVVRH VLVLRLQPGD SIVLFNGEGG EYSAELVEVE
RRSAMVKIRE FRDIEVEAPY RLTLAQGIAG GDKMDWLIEK AVELGASSFV PLTTTRSVVR
LSGDRAQRRH AHWQGIVRAS CEQCGRNRLP EVMPVREIAT WLGSMPRTPE EGDLRILLSP
RASISFSALP SEPPKGRVTV LVGPEGGFSA TEEAAAAAHG FTAVGLGPRV MRTETAGIAV
LSALAAGWGG W
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