| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_3288 |
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| Symbol | |
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| ID | 6281977 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010681 |
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| Strand | - |
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| Start bp | 3704474 |
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| End bp | 3706258 |
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| Gene Length | 1785 bp |
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| Protein Length | 594 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 642622861 |
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| Product | O-antigen polymerase |
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| Protein accession | YP_001896903 |
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| Protein GI | 187925261 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3307] Lipid A core - O-antigen ligase and related enzymes |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.709506 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCACCC CTTTCGCGCG CTATCTGTCT TTCAGTTTGT TGGCTCTCGC GTTGGTGCTG
CCTTATGCAG TTGTCAACCA CACCTATCCG ATTCCGACCT TTTACGCTGA ATTCACGGCA
CTCGCCCTGT ATCTGGCAAC CGGCGCGGGT GTCGTGCTGC TGGTAGCGAG CGCCAGGCCG
CGCGTGACGT TCGCCTCGCC GATGGTCGCG CTGGTGCCGT TGCTGTTCGG GCTGCTGCTG
GTGGCTCAGT CGGTGGTATT GCCGGTCTCG CAGCCTTCGA TGAACTGGCT CGGCGGCGGC
TATCTGCTGG CGGCCTTCAT GGCGACTCAT GCCGGTTATG GCTTCACGCG GGCCAAGCTC
AACGAGACCG CGTTGCGCTG GGCGGCGGGG GCGTTGATTG TCGGCGGGCT GTTTGCGGTG
TTTTGCCAGG TCATTCAGTT GTTTCACCTC GAAGTGCGCG TGTCGCCGCT CGTGGTCGCC
TATAACGTGA CGGTCCAGCG CCGGCCGTTC GGCAACATGG CTCAGGCCAA CCACCTCGCC
ACCTACATCG CGTTTGCGAT GGCGGGCGCG CTGTTCCTCG TGCAAACGCG GCGAATCGCC
GTGAGCATCT GGTTCCTCGT GTCGACGATT TTCGCGGTAG GCCTTGCGCT GACCGTGTCG
CGCGGGCCGT GGCTGCAAAT GGGTGTGATC GTGGTGGCAG GTTTCTGGAT GGCATTCGCG
CAGATGCGCG ACCGGTCGCA GGTACGCCGC GGCAATCGCG AGTGGATCAT TCCAATTGCG
CTGGCCGTGC TGTTTTTCGT GATCAACGCG CTGATCCGTT GGGCCAACGT TCGCTATCAC
CTGGAGCTCG GACAGTCCGC GGCGGAGCGT TTTCAGGACG CTGGCCAGAT CGCGCCGCGC
CTCGCGCTGT GGAAATACGG CTGGACGATG TTCAAGACGC ATCCGGTACT GGGCGTCGGT
TGGGGCGAAT TTCCGAGCTA TCAGTACGAG TTTGCCAAGT TGCTCGGCGG CGTCGAGATC
GCCAATAATT CGCACGACAT TTTCATCGAC CTGCTCGCGA AGACCGGTCT GGTCGGGCTG
GCGATCGTGC TGTTCGGTCT GATTACGTGG CTCGTGCGCG TGGTGCGCGC GCCGCAAAGT
TCGGCTCGCG TATTCGGCAT TGCGTTGATC GGTGTGCTGG TCATGCACGC GCTGGTCGAA
TATCCGCAGC AGTACATGTT CTTCCTGCTG CCGGCCATGT TCGTGTTCGG CCTGCTGGAA
ACGCGGCCGC TGCGGTTCGT GCCCCCCCGG CTGTCGTTCG GCGTCTTTGC CGTGGTGGTG
TTCGGCGGGT TGGCCGCGCT GTATCCGGTG TATCGCGACT ATGCGCGCGC CGAGGTGCTG
TACTACGGCC AGCGTCCCGC CGAGCAATAT CGCGCGGACC CGTCGTTCCT GTTCCAGGCG
TGGGGCGAGT ATGGTATGGC GACGCTTTTG CCGATGAATT CGACGGATCT GCCACTCAAG
CTCGCCATGC ACAAACAGGC TATGGCGTTG TTGCCGGGCG AAACCGTGTT GCGTCGCTAT
GCAGTGTTGC AAGCGTTGAG CGGCGATCAG GCCGGGGCAC TCGATACCGT CGAACGCCTG
AAAATTTTCG CCACGGAACT GAAGGACTGG CCGTCGCAAC TGAGTTACGT GTACCAGCTT
TGCGACGAGC AGAAAACGCT GACCGGTTTC AAGGCGGAAC TGGTCAAGCG CTACGGCATA
CCAGCAGCCG ACGTCAACGA GGACGACGAC AGCGACGAGG AGTGA
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| Protein sequence | MPTPFARYLS FSLLALALVL PYAVVNHTYP IPTFYAEFTA LALYLATGAG VVLLVASARP
RVTFASPMVA LVPLLFGLLL VAQSVVLPVS QPSMNWLGGG YLLAAFMATH AGYGFTRAKL
NETALRWAAG ALIVGGLFAV FCQVIQLFHL EVRVSPLVVA YNVTVQRRPF GNMAQANHLA
TYIAFAMAGA LFLVQTRRIA VSIWFLVSTI FAVGLALTVS RGPWLQMGVI VVAGFWMAFA
QMRDRSQVRR GNREWIIPIA LAVLFFVINA LIRWANVRYH LELGQSAAER FQDAGQIAPR
LALWKYGWTM FKTHPVLGVG WGEFPSYQYE FAKLLGGVEI ANNSHDIFID LLAKTGLVGL
AIVLFGLITW LVRVVRAPQS SARVFGIALI GVLVMHALVE YPQQYMFFLL PAMFVFGLLE
TRPLRFVPPR LSFGVFAVVV FGGLAALYPV YRDYARAEVL YYGQRPAEQY RADPSFLFQA
WGEYGMATLL PMNSTDLPLK LAMHKQAMAL LPGETVLRRY AVLQALSGDQ AGALDTVERL
KIFATELKDW PSQLSYVYQL CDEQKTLTGF KAELVKRYGI PAADVNEDDD SDEE
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