Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_3258 |
Symbol | |
ID | 6282396 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010681 |
Strand | - |
Start bp | 3672206 |
End bp | 3673438 |
Gene Length | 1233 bp |
Protein Length | 410 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 642622831 |
Product | efflux transporter, RND family, MFP subunit |
Protein accession | YP_001896873 |
Protein GI | 187925231 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.110627 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGCGTCG AACGGGTTCC ATTCCGCTTA ATCAGTGCCG CGACGGCTGC CGTATTGCTG GCAGCGTGCG GACCAAAACA ATCTGCCCCG CCGCAACAGA CGCCGGAAGT CGGCGTCGTC ACCGTTCAGC CGACGGCCGT GCCCGTCGTC ACCGAATTGC CCGGCCGCAC CAGTGCCTTC CTCGTCGCGC AAGTGCGCGC GCGGGTCGAC GGCATCGTGT TGCGCCGCGA GTTTACGGAA GGCAGCCAGG TCAAAGCGGG TCAACGTCTG TACAAGATCG ATCCGGCGCC GTACATCGCC ACGCTGAACA ACGCCAAGGC GACGCTGGCG AAGGCGCAGG CCAACCTCGT GTCGACCACG GCGCAGGCCA ATCGCTACAA GGTGCTGGTC GCCGCCAACG CGGTCAGCAA GCAGGACTAC GACAACGCGG TGGCTTCGGA AGGCCAGGCC GCGGCTGACG TCGCCGCGGG CAAGGCGGCG GTCGACACGG CGCAGATCAA CCTCGGCTAC ACGGATGTGG TTTCGCCGGT GAGCGGCCAG GTCGGCATCT CGCAGGTCAC GCCGGGCGCC TACGTACAGG CGAGCGCCGC GACGTTGATG GCGACCGTGC AGACGCTGGA TCCGGTCTAT GTGGACCTGA CGCAATCTAG CCTCGACGGG CTGAAGCTGC GCCGCGACAT GCAGGAAGGG CGCCTGAAGA CCACGGGTCC GGACGCCGCC AAGGTGTCGC TGATTCTGGA AGACGGCCGC ACCTATTCGG AGAAGGGCAA GCTGCAGTTC ACCGACGTGA CGGTCGACCA GGGCACGGGT TCGGTTACCG TGCGCGCGAT CTTCAAGAAC GCGGACAAGG TGCTGCTGCC GGGCATGTTC GTGCGCGCGC GCATCGAAGA AGGCGTCAAC GAGAATGCGC TCGTCGTACC GCAAGTCGGC ATCACGCATG ACCAGAAGGG TCAGCCGACC GCGCTGGTCG TCGGTGACGA CAATAAGGTG GCGTTGCGTC AGCTGGTCAC GTCGGGCACG TACGGTTCGA ACTGGGTGGT CGAAAGCGGC CTGAAGCCGG GCGACCGCGT GATCGTGCAG GGCACCGACA AGGCGAAGCC CGGCATGCAG GTCAAGACCG TTGCCGCGCA ACTTCCCGCC ACACCCGCTT CCGGCGCTGC TGCTCAGAGC GCGCCGGCCG CCAGCGGTGC TGCGCAGACG GCACAACCTG CCTCCGCTGC ATCGGGCGCG TAA
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Protein sequence | MRVERVPFRL ISAATAAVLL AACGPKQSAP PQQTPEVGVV TVQPTAVPVV TELPGRTSAF LVAQVRARVD GIVLRREFTE GSQVKAGQRL YKIDPAPYIA TLNNAKATLA KAQANLVSTT AQANRYKVLV AANAVSKQDY DNAVASEGQA AADVAAGKAA VDTAQINLGY TDVVSPVSGQ VGISQVTPGA YVQASAATLM ATVQTLDPVY VDLTQSSLDG LKLRRDMQEG RLKTTGPDAA KVSLILEDGR TYSEKGKLQF TDVTVDQGTG SVTVRAIFKN ADKVLLPGMF VRARIEEGVN ENALVVPQVG ITHDQKGQPT ALVVGDDNKV ALRQLVTSGT YGSNWVVESG LKPGDRVIVQ GTDKAKPGMQ VKTVAAQLPA TPASGAAAQS APAASGAAQT AQPASAASGA
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