Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_3178 |
Symbol | |
ID | 6281505 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010681 |
Strand | + |
Start bp | 3581073 |
End bp | 3583256 |
Gene Length | 2184 bp |
Protein Length | 727 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 642622752 |
Product | oligopeptide/dipeptide ABC transporter, ATPase subunit |
Protein accession | YP_001896794 |
Protein GI | 187925152 |
COG category | [E] Amino acid transport and metabolism [P] Inorganic ion transport and metabolism |
COG ID | [COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [COG4608] ABC-type oligopeptide transport system, ATPase component |
TIGRFAM ID | [TIGR02323] phosphonate C-P lyase system protein PhnK |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.00139803 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGAACGGCC CGCCGCCCTC CTCGTTCCCC GCCTTCGACG TCTCGAAGAG CGACCGCACG GACGCGCTGA CCGTCGTCGG CCTGACGGTC ACGTACCGGA TACGCGGACG CGATCGCGAA GTGCTGCAGG ACATTTCGTT TCGCGTGCGG CGCGGCGAAG CATACGGTCT CGTGGGCGAG TCCGGCTGCG GCAAATCGAC GGTCGCGATG GCGGCGCTGC GCTATCTGCC GCGCAATGGC AAGGTGAAGG CAGGCAAGAT CATCATCGCC GGCGAGGACG TGCAGAAGCT TAACGCCGAC GCGTTGCGCA ACATGCGCGC GAACGCGATT TCGATGGTCT ATCAGGATCC GGGGCGTGCG CTGAATCCGT CGCTGACGAT CGCGCGGCAA GTCTCCGAAG CGTTCGAAGC CGCCGGTGTC GCGCGCGACG AAGCCTTGCG GCGCACGCTC GAGATGCTGC AGCGCGTACG CATTGCCGCG CCCGAGCGGG TGATGGAGAG TTATCCACAT CAATTGTCGG GCGGCATGCA ACAGCGCGTG GTGATCGCCA TGGCGCTCGC CTCGAACCCC GCACTGCTGA TTCTCGACGA ACCGACCACC GGGCTCGATG CGACCGTCGA AGCGGAAGTG CTCGACCTCG TCGCGCAGTT GCGCAAAGAG CTCGGCACGG CGGTGCTCTT CATCAGTCAC AACCTCGCGG TGATCGGGCG CATGTGCGAA CGCGTCGGCG TGCTTTACGC GGGCAAACTG GTCGAAGAAG GCGCGACGCA AGATGTCTTC ACGCGGCCGC GTCATCCGTA TACGGTCGGG CTGTTGCGCT GTTTGCCCAC AACTGGGCGC AGCAAGGACA GCGAACGGCT CGATACGATC GCGGGCAGTT TGCCCTCGCC CGGTTCGGTC ACGCAGGGCT GCATCTACGC GGACCGCTGC CGCCTCGCCG ACGACCGCTG CCGCCGCGAA GCGCCGCCGC CGTATCGCGT GAGCGCCGCG CGCGGCGACC AGATGTCGCG CTGTCATTAC CACGAGCGCG CGATCGACTT GCCGCGTGCG AGCGCGGAAG CTTTGCCCGA GCGCAGTGAT GCGCCGGTCG ACGGCAAGCC CCCTGCTCTC GTGCTGCGGG CAGAAAGACT CTCGAAGACC TTTCACGTGT CCGGCGCTGC GCTGCGTGCG GTCGACAACG TCTCGATCGA TCTCGCGAGC GGCGAAACGC TTGGCCTCGT CGGCGAATCG GGCAGCGGCA AAACGACGCT CGCCAAGCTC ATGCTCGGCC TGCTCACGCC GGATGCGGGC AGCGTGCTCG AACTCGACGG CGCGCCGCTC GCCGCGCGCG TCACGCGGCG CAACACCGAG CAGGTCAAGT CGCTGCAGAT CGTTTTTCAG AATCCGGACT CCGCGCTCAA TCGCGCGCAT TCGGTGAAAC GGCTGATCGG CCGCGCGCTG TCGCGTCTCA CCGCATTGCG CGGGCCGGCC ATCGACGAAC GGCTTGCCGC GTTGACGGAC GCCGTGCGCC TGCCGCAGCG CTATCTCGGC TCACGCACGC GGCAACTGTC CGGCGGGCTC AAACAGCGGG TGGCGATTGC GCGCGCGTTT GCCGGCGAAC CGCGCGTGGT GGTCTGCGAC GAACCGACTT CCGCGCTCGA CGTCTCCGTG CAGGCCGCGA TCCTGAACCT GCTCGCTGAT CTGCAACGTG AGCGCGGAGT CAGTTACGTT TTCATCTCGC ACGATCTTCA CGTCGTGCGC TATCTGGCGG ATCGTATCGC GGTGCTGTAT CTGGGGAGGC TGCTGGAAAT CGGACCGGCA GCGGCCGTGT TCGAAGGACC GCATCATCCT TATACAGAAG CATTGCTGTC CTCGGTGCCG ACACTCGACG GCCAAGGCGG CGCGACCCGT ATCCACCTGT CCGGCGATTT GCCGAGTGCG GCATCGCCGC CGTCCGGCTG CGTGTTTCAT ACACGCTGCC CGCGCAAGCT CGGCGCGATC TGCGAGCAGC AGGACCCGCC GTTCGTCGAT GCCGGCGAAG GCGAGGCGGC GATGCCGTCC GCGCATCGAA TCCGCTGCCA CATCCCCGTT GACGAATTGC GCGCGCTGCA AACTGCTTCG CGCGGCGATG CGGGACAAGT CGCGGGCAAG GTGCTTGGCG ACGGATCAGA AAACGCGCCC GAGAACGCGG GGCGTGACGA GTAA
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Protein sequence | MNGPPPSSFP AFDVSKSDRT DALTVVGLTV TYRIRGRDRE VLQDISFRVR RGEAYGLVGE SGCGKSTVAM AALRYLPRNG KVKAGKIIIA GEDVQKLNAD ALRNMRANAI SMVYQDPGRA LNPSLTIARQ VSEAFEAAGV ARDEALRRTL EMLQRVRIAA PERVMESYPH QLSGGMQQRV VIAMALASNP ALLILDEPTT GLDATVEAEV LDLVAQLRKE LGTAVLFISH NLAVIGRMCE RVGVLYAGKL VEEGATQDVF TRPRHPYTVG LLRCLPTTGR SKDSERLDTI AGSLPSPGSV TQGCIYADRC RLADDRCRRE APPPYRVSAA RGDQMSRCHY HERAIDLPRA SAEALPERSD APVDGKPPAL VLRAERLSKT FHVSGAALRA VDNVSIDLAS GETLGLVGES GSGKTTLAKL MLGLLTPDAG SVLELDGAPL AARVTRRNTE QVKSLQIVFQ NPDSALNRAH SVKRLIGRAL SRLTALRGPA IDERLAALTD AVRLPQRYLG SRTRQLSGGL KQRVAIARAF AGEPRVVVCD EPTSALDVSV QAAILNLLAD LQRERGVSYV FISHDLHVVR YLADRIAVLY LGRLLEIGPA AAVFEGPHHP YTEALLSSVP TLDGQGGATR IHLSGDLPSA ASPPSGCVFH TRCPRKLGAI CEQQDPPFVD AGEGEAAMPS AHRIRCHIPV DELRALQTAS RGDAGQVAGK VLGDGSENAP ENAGRDE
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