Gene Bphyt_3176 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphyt_3176 
Symbol 
ID6281503 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phytofirmans PsJN 
KingdomBacteria 
Replicon accessionNC_010681 
Strand
Start bp3579203 
End bp3580213 
Gene Length1011 bp 
Protein Length336 aa 
Translation table11 
GC content65% 
IMG OID642622750 
Productbinding-protein-dependent transport systems inner membrane component 
Protein accessionYP_001896792 
Protein GI187925150 
COG category[E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism 
COG ID[COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.000749118 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGTCGACCA CGGTGAGCCC TTCCGCTTCT TCTGCGCCGA GCGGCAACGC GGGCCGTGTC 
GTGCGTTTTC TGGCGACGCG TGTGGGCTTG TCGCTAATCA CGCTGTGGCT GCTGTCGGTG
ATCGTGTTCG CGGGCGGACA ACTTCTGCCC GGCGACATCG GCCGCGCGGT GCTCGGCCCG
CTGGCCGATG CGCGCGCGGT TGCCGCGCTC AATCATCAGC TCGGCGCGGA CCGTCCGCTG
ATGACGCAAT ACGTCGACTG GATCTCGCAT TTCGTGCGTG GCGATATGGG GCTGTCCTAC
GCGTATCGCG AGCCGGTGCG GCCGTTTATC GCCGAGGCGC TCGCGCATTC CGCCAAGCTC
GGCTTGCTGG CGTTCATCGT GGTCGTGCCG CTCGGCATTG CGGGCGGCGT GTGGTCGGCC
ATGCACGCGG GACGCTGGCT CGATCGCACG ATCAGCATCG CGGGACTATC GGCGACAGTC
GTGCCGGAAT TCGTTTCGTC GATCGTGCTG ATTCTGGTGT TCGGCGTGTG GTTGCGCTGG
CTGCCGATCG AAGCGTCGTA TCCGCCCGAA GCGGGCGCGC TCGAACAATT GCGTCATCTG
GTGCTGCCGG TCCTGCCGCT CGTGCTTGTG TTCTTCGGCT ATATCGCTCG CATGGCGCGT
GCGGGGACCG TCGAGGCGCT CGATGCCGAC TACACGCGCA CCGCGATTCT CAAAGGCTTG
CCGCGTCATA TCGTGATCTG GCGGCATGTG CTGCGCAATG CATTGCTGCC CACCATCACG
GTCGCCGCCA CGCAACTCGG CTATATGATC GGCGGCCTCG TGGTGGTCGA GACGCTGTTC
CACTATCAAG GTATCGGCTC GCTGATCTAC AACGCGGCCA AGGCCAAGGA CTTTCCGATG
CTCGAAGCAG GCGTGCTGAC CATCGGCGTG GTCTACACCG TCGCCAATCT CGTCGCCGAT
GCGCTGCATG TGCTGCTCAA TCCGCGGCTG CGGGTGAGGA GCGCCGAATG A
 
Protein sequence
MSTTVSPSAS SAPSGNAGRV VRFLATRVGL SLITLWLLSV IVFAGGQLLP GDIGRAVLGP 
LADARAVAAL NHQLGADRPL MTQYVDWISH FVRGDMGLSY AYREPVRPFI AEALAHSAKL
GLLAFIVVVP LGIAGGVWSA MHAGRWLDRT ISIAGLSATV VPEFVSSIVL ILVFGVWLRW
LPIEASYPPE AGALEQLRHL VLPVLPLVLV FFGYIARMAR AGTVEALDAD YTRTAILKGL
PRHIVIWRHV LRNALLPTIT VAATQLGYMI GGLVVVETLF HYQGIGSLIY NAAKAKDFPM
LEAGVLTIGV VYTVANLVAD ALHVLLNPRL RVRSAE