Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_3055 |
Symbol | |
ID | 6283725 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010681 |
Strand | - |
Start bp | 3446691 |
End bp | 3449102 |
Gene Length | 2412 bp |
Protein Length | 803 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 642622623 |
Product | putative drug efflux pump, RND superfamily |
Protein accession | YP_001896671 |
Protein GI | 187925029 |
COG category | [R] General function prediction only |
COG ID | [COG4258] Predicted exporter |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.100212 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 0.322516 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGACATGC TGCAACAGCG ATCCGCGAAA CAGGCGTGGG GTATGCGCGC CGCGTGGCTG CTGCTCGCGC TCGCTGCGGC GTTGTATTGC GGCTGGCGAT TCGCGGGACC GTCGCCGCTG CAAACCAATC TGCTCGCGTT GTTGCCGGCG ACCGAGGCAG ATCCGGTCGC CGAAAAGGCG GTCGATACAC TGGCGAGCGC GCTCGGCGAC CGCACCGTTT TTCTCGTTAC CAGCAACGAC GACGCGCATG CGAAAGCCGC GGCGAAACAA CTCGGCGCTT CGTTGCAAAA GAGCGGGGCG TTCGGTTCGG TGACGGCCGA GTTGCCGCCG TTCGATTTAT CGCAGATCGC GGCGTTGTAC ATGCCATATC GTTTCGGCTT GCTGGCTCCT GCAGACCGGG CGGCGCTCGC GAGTGGCACG GTCGGCACCA CCACGTTGCA CGACGCGCTC GCCCAGCGCA TCTACAGCCC GCTGCGCGGC GGACTCACCA CGCCGCTCTC CGACGATCCG TTCGGCTGGC TCGAACACTG GCTCGGCGGC CTGCCGCTTG CCACATCGAA TCTCGAACTC GAAGACAACA TGCTGGTCGC GCATCAAGGT GCCGCCACCA GCGTACTAAT CGTCGCGACG CTGCCGGGCT CTGCGTACGA AACCAAAACG CAGCACGCGG TACTCGCGTC GCTCGCTCAA GGCGAAAGCA CATTAAAACA ATCGTTCCCG GATGTCTCCG TGGCGCGAAC CGGCGCCGTG TTCTACGCCG AGTCGGCACG CAGCGCGTCG GAACATGAAG TGCATCTGAT CGGCCTCGCG TCGCTGTGCG GCATCGCGCT GCTGATGATG TGGGTGTTCC GTTCGCCGCG TCTGTTGTTG CTCGGCTTCG TGTCCACCGC GCTCGGCATT GTCTGCGCGC TGGCGGTGAC GATGCTGGTA TTCGGCAAGC TGCATCTGTT GACGCTCGTG TTCGGCGCGA GCCTGATCGG CGAGGCCGTC GACTATTCGA TTCAGTACTT CGTCGTGTAT CTCGGCGCGC AACGCGATTG GGACGCGCGG CGTGGCGCGC GCGCCGTGCG TCCCGCGTTG AGCGTGGCGC TCGCGACGAG CCTGCTCGGC TACGCGATCC TCACGTGGGT GCCGTTTCCC GCGCTCAAGC AGATCGCCTG CTTCGCGATT GCCGGTATTA CGACGGCGTT CGCGTCCGTG CTCTGGCTGC TGCCCGCGTT GCTCACCCGC GCGCCCAAAC GCAGCCCCAA GCGCGTGTTT GCAGGTGCGG CGCGCGTGCT GACGGTGTGG CATCGCACGA TCGGCGGCAG GCGGGCGTGG TTCGTGGCGG CGCTGTTGCT GCTGCTGGCG ATTCCCGGCT GGCTGCGCCT GACCAGCGAC GACGATATCC ATCTGCTGAT CCAGCGCGAT CCGGCGCTCG TCGCGCAGGA AGACAAAGTG CGCGCGGCGG TCGGCGTGGA TAACAGTGCG CAGTTTTTCG TCGTGCGCGG CGAGACGCCC GAGGTCGTGC TGCAACGCGC GGAAGCATTA GGCACGAAAC TGGATGCGTT GAACGGCACC GCGGACAAGG TCGGCAGCTA TCAGTCGGTT GCGCAGTTCG TGCCGTCCGC GAAACAGCAG AATGAAGATC GTGCGTTGCT TTCGCAGCAT GTTTTCAACG ACCGCGCCGC ATTGCGCGCC ACGCTCCTGC AAGCCGGTTT CAAGGACGAA GTGGCCGACG CCTGGCTCGC CGCGTACGCG AAACCACAAG CGCCGCTCAC GATCGATACG TGGCTCGCGA CGCCGTGGTC GCAACCGTAC AAACACCTCT GGCTTGGCGA AGTCGATTCG TCGACGAAAG CCTATGCGGC GGTCGTCATC CCGCAGGGCG TGACGCCGCA GAACGAACCC GCGTTGATCG CGGCCGCGCA GGGCTTGTCC GGGGTGGTGT TCGTCGACAA GGCCGCCAGC GTGTCGAAAC TGTTCGGCGC GTATCGCGTG GATAGCGGCT GGTGGCTCGG CGGCGCGCTT GCACTCGTGC TCGTTCTGTT GATGCTGAGA TACAAAGTGC GTGGGGGCAT CGCCGTGACC TTGCCGGTGC TGCTCGCGGT GGGCGTCACG CTCGCCGTAT TCGGCTATGC GCACGTACCG CTCAATCTGT TCAACTGGCT CGCGCTGATG CTCGTGCTCG GCGTGGGCGC AAACTATGCC GTATTCCTGC GCGAAGGCTG CCTGCGCGCG GACGCGGATC TCGGCGCGGT GTGGACGGGC GTGCTGCTGT CGGCGGCTAC GACGTTGTTG TCGTTCGGCA TGCTCGGTAT GAGCGCGATG CCCGCGCTGG AGAGTTTCGG CGCGACGCTC GCGCTCGGCA TTGCGGTTTC GGTGCTGCTC GCGCCGATCG GCATGCCATT GGAATCAAGG AGGGCCGCAT GA
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Protein sequence | MDMLQQRSAK QAWGMRAAWL LLALAAALYC GWRFAGPSPL QTNLLALLPA TEADPVAEKA VDTLASALGD RTVFLVTSND DAHAKAAAKQ LGASLQKSGA FGSVTAELPP FDLSQIAALY MPYRFGLLAP ADRAALASGT VGTTTLHDAL AQRIYSPLRG GLTTPLSDDP FGWLEHWLGG LPLATSNLEL EDNMLVAHQG AATSVLIVAT LPGSAYETKT QHAVLASLAQ GESTLKQSFP DVSVARTGAV FYAESARSAS EHEVHLIGLA SLCGIALLMM WVFRSPRLLL LGFVSTALGI VCALAVTMLV FGKLHLLTLV FGASLIGEAV DYSIQYFVVY LGAQRDWDAR RGARAVRPAL SVALATSLLG YAILTWVPFP ALKQIACFAI AGITTAFASV LWLLPALLTR APKRSPKRVF AGAARVLTVW HRTIGGRRAW FVAALLLLLA IPGWLRLTSD DDIHLLIQRD PALVAQEDKV RAAVGVDNSA QFFVVRGETP EVVLQRAEAL GTKLDALNGT ADKVGSYQSV AQFVPSAKQQ NEDRALLSQH VFNDRAALRA TLLQAGFKDE VADAWLAAYA KPQAPLTIDT WLATPWSQPY KHLWLGEVDS STKAYAAVVI PQGVTPQNEP ALIAAAQGLS GVVFVDKAAS VSKLFGAYRV DSGWWLGGAL ALVLVLLMLR YKVRGGIAVT LPVLLAVGVT LAVFGYAHVP LNLFNWLALM LVLGVGANYA VFLREGCLRA DADLGAVWTG VLLSAATTLL SFGMLGMSAM PALESFGATL ALGIAVSVLL APIGMPLESR RAA
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