Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_2788 |
Symbol | |
ID | 6283369 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010681 |
Strand | - |
Start bp | 3145085 |
End bp | 3147754 |
Gene Length | 2670 bp |
Protein Length | 889 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 642622350 |
Product | type VI secretion system Vgr family protein |
Protein accession | YP_001896406 |
Protein GI | 187924764 |
COG category | [S] Function unknown |
COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR01646] Rhs element Vgr protein [TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 0.154315 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCATCAT GGATTGACCC GTCCCGCACG CTGGAGATTG TCAGCGCGGG CCTGCCGAAG TGGCAGGCCG AATGCCTTTT TACGGTGTCG CGCGTGAAGG GCACCGAAAA GCTCGGCAAA CTCTACGACT ACACGGTCGA AGTTGCGACG AAGGAGCATG CCAGTCTGAG CGTGCATGAG GCGCAGGCGC TGGTCAAAGT GGATGAGCTC GTCGGCAGGC AAGTGACGGT CAGGATTGCT ATTGAAGGAA GCGGCACCTG GCAGGTCGGT CGAAATGGCA CGGCCCCGTT GGTGAACGTT GGCGCGGATG TACGCGAGAT CACCGGCCTG ATCGTCTCGG CGCAGTGCGT TGGGGCCGAT ACGCGGCGGG CGTTCTACCG GTTGCGGATT CGCCCGTGGC TGTGGCTCGC GACCTTGAAC CAGGATTCAA GACTCTTCCA AGACAAGACC GTCAAGGAAA TATCCGAACT GATCCTGAAG AAGTATCCAT TCCCCTACGA ACTGCGCCTG TCGGGTCTTG GATTTGGGCG GCAATATCCG AAACGCGACT ACCAGCGGAT GTACTGGGAG TCAGACTGGG GCTATCTGAA TCGGCTATGG CAGGAATGGG GCATCACGTT CTTTTACGAG GGTTTGAGAC TGGTCCTGTG CGATTCCACC AGCGCATACA GAAAGCACGG CCCCGCATAC GAAACGCTGC GTTATCTGGA GCGCGGTGGC CAGCGCATCG ACGAGGAACA TATTCACCAG TTCGAGATTG CGCGCGCCCT GACCACGGGC AAGGTGAGCG TGACCGACTA CGACTATACG CAGTCGCGTG CGGACCTGGC CGCGAAGGAT TCGGACTACC GCGAGCGCGC GAATGACAAT ATCGAGCACT ATGCCTGGGG GGATTACTCT CAGCCGCTGG CGGGCGCGAT GGGAACCGCG GCGCAGCCCA ATGAAGTCGA TTTCGAGGGT GAACATCTCG CCCGCGTGCG GCTCGAGGCG AAGCGTGCAA AGAGCCTGCG TGGCAAGGGG CGCGGCAACA TGCGCGGGCT GAGGGTAGGC CACACGTTCC ACCTGGAAGG CTATCCGCTC GCACCGGGCG ATGGCGAATA CCTCGTCGTC TCCACGAAGA TCGAGATCGT CAACAACGAT ACGGTGTCGA ACCAGGGCGC ACTGCAACGC AACTACACCT GCGATACGCA ATTTACGGTG CAACCCGCCA GCACGTATTT CCGTACACCG CAGAAGGCGA AGAAGCCGCG CTCGCAAGGC GAGGTAGCGG TCGTGACAGG CTATTCCTCG TCAAAAATCT GGACTGACAA GTATGGTCGG GCGAAAGTCT CGTTTCCTTG GGACCGCGAG GGCAAGCAGG ACCAGGATTC AAGTTGCTGG GTGCGGGTCT CCTCGCCGTG GCAGGGCGCG AGCTACGGCG CGATCTATAT CCCGCGGGTT GGCCACGAGG TCGTCATCGG CTATCACGAT AACGACCCGG ACAAGCCCTA TATTGCGGGC CGGCACGTGA ACCAGTTCCA CGAGCCGCCT TGGCCGCTGC CCGCCAACCA GGCGCTTTCG GGCTGGCTGA GCGAGGACCT GGAGGGGCCG GCGACGAACA GCGTCGTCAC GGACGACACA CCTGGCAAGC TCCAGGTACA GGTGGCGAGC GACCACGCGC AGTCGCGCCT GGTAGTCGGC AGCAATACGC GCATTGACCG GCGCAAGGGG CGTAGCGAAG CACGTGGCGA GGGATTTGAA CTGGCCACCG ATGCGCACGG CGTTGCGCGG GCGAACGGGA GCCTGCTAAT TACCACCGAA TCCCGCAGCG GTGCGCGGGC GCCGGCGCTG GATCGCGGTG AGACGGTGCA GCGTCTGGTC GAGGCAGCGG AGCAGCATGA CGTGCTGGCG GCAGCGGCTG TTCAGGCGGG TGCGCAAGTG TCGCAGGATC GTAGCGCCCT GGGTCAGTCT CTGAAGGCGT TGGGGACGGA AATTGGTGAC GCCGGCCACG ATGGGCTGGG ATGCCCATCG AAGCCGCATC TGGTGCTTGC CGCCGCCGCC GACATTGCCG CGACCGCGAC CAGTAATGCC CATGTGCACG GCGGCAAGAA TATCGCCTTG ACGAGCGGCA AGCATACGAG CATCAGCACA GGAGGCAGCC TGTTCGCCGC AGCACGCAAT GCGGTCAGGC TGTTCGCCTA CCAGTTTGGC ATCCGCATTA TTTCGTATGC CGAGGACATC AATATTTCCG CGCTGAGAAA GAACCTGAAT CTGCTGGCAA AACTCGACAT TACCCAAAGT GCAAACCGCA TCACGATCAA GGCAACGGAA GAAGTGATGC TTCACGGTGG CGACAGCTAT ATCAGCCTGA AGAACGGCAA GATCAAGGTG GGTGGCGGTG TCTACGAGGT GAACGCCGAG GTGAAAAACC TGCCTCCGAA GCCGATGGGG GTGAGCGCGG ATGGACTGCC CGACGTGCAG GCGAACGACC AGATGTTCCG TACGCTCTCA CCAACCGGTC AACCACTTCC TGGCGTGGAC TACCGGCTCA CTACGCAATC GGGCGGACAT ATTTTCAGAA CGGATAGTCG CGGAACTTCA CCGGCCCTGA ATACCGCGGA GCAGGAAAGC GCAACGTTCC AGTTGCACTG GGATGAGTTT TCCGCCGCTC GTGAAAATTC CAGTGTGTAA
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Protein sequence | MSSWIDPSRT LEIVSAGLPK WQAECLFTVS RVKGTEKLGK LYDYTVEVAT KEHASLSVHE AQALVKVDEL VGRQVTVRIA IEGSGTWQVG RNGTAPLVNV GADVREITGL IVSAQCVGAD TRRAFYRLRI RPWLWLATLN QDSRLFQDKT VKEISELILK KYPFPYELRL SGLGFGRQYP KRDYQRMYWE SDWGYLNRLW QEWGITFFYE GLRLVLCDST SAYRKHGPAY ETLRYLERGG QRIDEEHIHQ FEIARALTTG KVSVTDYDYT QSRADLAAKD SDYRERANDN IEHYAWGDYS QPLAGAMGTA AQPNEVDFEG EHLARVRLEA KRAKSLRGKG RGNMRGLRVG HTFHLEGYPL APGDGEYLVV STKIEIVNND TVSNQGALQR NYTCDTQFTV QPASTYFRTP QKAKKPRSQG EVAVVTGYSS SKIWTDKYGR AKVSFPWDRE GKQDQDSSCW VRVSSPWQGA SYGAIYIPRV GHEVVIGYHD NDPDKPYIAG RHVNQFHEPP WPLPANQALS GWLSEDLEGP ATNSVVTDDT PGKLQVQVAS DHAQSRLVVG SNTRIDRRKG RSEARGEGFE LATDAHGVAR ANGSLLITTE SRSGARAPAL DRGETVQRLV EAAEQHDVLA AAAVQAGAQV SQDRSALGQS LKALGTEIGD AGHDGLGCPS KPHLVLAAAA DIAATATSNA HVHGGKNIAL TSGKHTSIST GGSLFAAARN AVRLFAYQFG IRIISYAEDI NISALRKNLN LLAKLDITQS ANRITIKATE EVMLHGGDSY ISLKNGKIKV GGGVYEVNAE VKNLPPKPMG VSADGLPDVQ ANDQMFRTLS PTGQPLPGVD YRLTTQSGGH IFRTDSRGTS PALNTAEQES ATFQLHWDEF SAARENSSV
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