Gene Bphyt_2788 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphyt_2788 
Symbol 
ID6283369 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phytofirmans PsJN 
KingdomBacteria 
Replicon accessionNC_010681 
Strand
Start bp3145085 
End bp3147754 
Gene Length2670 bp 
Protein Length889 aa 
Translation table11 
GC content61% 
IMG OID642622350 
Producttype VI secretion system Vgr family protein 
Protein accessionYP_001896406 
Protein GI187924764 
COG category[S] Function unknown 
COG ID[COG3501] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value0.154315 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCATCAT GGATTGACCC GTCCCGCACG CTGGAGATTG TCAGCGCGGG CCTGCCGAAG 
TGGCAGGCCG AATGCCTTTT TACGGTGTCG CGCGTGAAGG GCACCGAAAA GCTCGGCAAA
CTCTACGACT ACACGGTCGA AGTTGCGACG AAGGAGCATG CCAGTCTGAG CGTGCATGAG
GCGCAGGCGC TGGTCAAAGT GGATGAGCTC GTCGGCAGGC AAGTGACGGT CAGGATTGCT
ATTGAAGGAA GCGGCACCTG GCAGGTCGGT CGAAATGGCA CGGCCCCGTT GGTGAACGTT
GGCGCGGATG TACGCGAGAT CACCGGCCTG ATCGTCTCGG CGCAGTGCGT TGGGGCCGAT
ACGCGGCGGG CGTTCTACCG GTTGCGGATT CGCCCGTGGC TGTGGCTCGC GACCTTGAAC
CAGGATTCAA GACTCTTCCA AGACAAGACC GTCAAGGAAA TATCCGAACT GATCCTGAAG
AAGTATCCAT TCCCCTACGA ACTGCGCCTG TCGGGTCTTG GATTTGGGCG GCAATATCCG
AAACGCGACT ACCAGCGGAT GTACTGGGAG TCAGACTGGG GCTATCTGAA TCGGCTATGG
CAGGAATGGG GCATCACGTT CTTTTACGAG GGTTTGAGAC TGGTCCTGTG CGATTCCACC
AGCGCATACA GAAAGCACGG CCCCGCATAC GAAACGCTGC GTTATCTGGA GCGCGGTGGC
CAGCGCATCG ACGAGGAACA TATTCACCAG TTCGAGATTG CGCGCGCCCT GACCACGGGC
AAGGTGAGCG TGACCGACTA CGACTATACG CAGTCGCGTG CGGACCTGGC CGCGAAGGAT
TCGGACTACC GCGAGCGCGC GAATGACAAT ATCGAGCACT ATGCCTGGGG GGATTACTCT
CAGCCGCTGG CGGGCGCGAT GGGAACCGCG GCGCAGCCCA ATGAAGTCGA TTTCGAGGGT
GAACATCTCG CCCGCGTGCG GCTCGAGGCG AAGCGTGCAA AGAGCCTGCG TGGCAAGGGG
CGCGGCAACA TGCGCGGGCT GAGGGTAGGC CACACGTTCC ACCTGGAAGG CTATCCGCTC
GCACCGGGCG ATGGCGAATA CCTCGTCGTC TCCACGAAGA TCGAGATCGT CAACAACGAT
ACGGTGTCGA ACCAGGGCGC ACTGCAACGC AACTACACCT GCGATACGCA ATTTACGGTG
CAACCCGCCA GCACGTATTT CCGTACACCG CAGAAGGCGA AGAAGCCGCG CTCGCAAGGC
GAGGTAGCGG TCGTGACAGG CTATTCCTCG TCAAAAATCT GGACTGACAA GTATGGTCGG
GCGAAAGTCT CGTTTCCTTG GGACCGCGAG GGCAAGCAGG ACCAGGATTC AAGTTGCTGG
GTGCGGGTCT CCTCGCCGTG GCAGGGCGCG AGCTACGGCG CGATCTATAT CCCGCGGGTT
GGCCACGAGG TCGTCATCGG CTATCACGAT AACGACCCGG ACAAGCCCTA TATTGCGGGC
CGGCACGTGA ACCAGTTCCA CGAGCCGCCT TGGCCGCTGC CCGCCAACCA GGCGCTTTCG
GGCTGGCTGA GCGAGGACCT GGAGGGGCCG GCGACGAACA GCGTCGTCAC GGACGACACA
CCTGGCAAGC TCCAGGTACA GGTGGCGAGC GACCACGCGC AGTCGCGCCT GGTAGTCGGC
AGCAATACGC GCATTGACCG GCGCAAGGGG CGTAGCGAAG CACGTGGCGA GGGATTTGAA
CTGGCCACCG ATGCGCACGG CGTTGCGCGG GCGAACGGGA GCCTGCTAAT TACCACCGAA
TCCCGCAGCG GTGCGCGGGC GCCGGCGCTG GATCGCGGTG AGACGGTGCA GCGTCTGGTC
GAGGCAGCGG AGCAGCATGA CGTGCTGGCG GCAGCGGCTG TTCAGGCGGG TGCGCAAGTG
TCGCAGGATC GTAGCGCCCT GGGTCAGTCT CTGAAGGCGT TGGGGACGGA AATTGGTGAC
GCCGGCCACG ATGGGCTGGG ATGCCCATCG AAGCCGCATC TGGTGCTTGC CGCCGCCGCC
GACATTGCCG CGACCGCGAC CAGTAATGCC CATGTGCACG GCGGCAAGAA TATCGCCTTG
ACGAGCGGCA AGCATACGAG CATCAGCACA GGAGGCAGCC TGTTCGCCGC AGCACGCAAT
GCGGTCAGGC TGTTCGCCTA CCAGTTTGGC ATCCGCATTA TTTCGTATGC CGAGGACATC
AATATTTCCG CGCTGAGAAA GAACCTGAAT CTGCTGGCAA AACTCGACAT TACCCAAAGT
GCAAACCGCA TCACGATCAA GGCAACGGAA GAAGTGATGC TTCACGGTGG CGACAGCTAT
ATCAGCCTGA AGAACGGCAA GATCAAGGTG GGTGGCGGTG TCTACGAGGT GAACGCCGAG
GTGAAAAACC TGCCTCCGAA GCCGATGGGG GTGAGCGCGG ATGGACTGCC CGACGTGCAG
GCGAACGACC AGATGTTCCG TACGCTCTCA CCAACCGGTC AACCACTTCC TGGCGTGGAC
TACCGGCTCA CTACGCAATC GGGCGGACAT ATTTTCAGAA CGGATAGTCG CGGAACTTCA
CCGGCCCTGA ATACCGCGGA GCAGGAAAGC GCAACGTTCC AGTTGCACTG GGATGAGTTT
TCCGCCGCTC GTGAAAATTC CAGTGTGTAA
 
Protein sequence
MSSWIDPSRT LEIVSAGLPK WQAECLFTVS RVKGTEKLGK LYDYTVEVAT KEHASLSVHE 
AQALVKVDEL VGRQVTVRIA IEGSGTWQVG RNGTAPLVNV GADVREITGL IVSAQCVGAD
TRRAFYRLRI RPWLWLATLN QDSRLFQDKT VKEISELILK KYPFPYELRL SGLGFGRQYP
KRDYQRMYWE SDWGYLNRLW QEWGITFFYE GLRLVLCDST SAYRKHGPAY ETLRYLERGG
QRIDEEHIHQ FEIARALTTG KVSVTDYDYT QSRADLAAKD SDYRERANDN IEHYAWGDYS
QPLAGAMGTA AQPNEVDFEG EHLARVRLEA KRAKSLRGKG RGNMRGLRVG HTFHLEGYPL
APGDGEYLVV STKIEIVNND TVSNQGALQR NYTCDTQFTV QPASTYFRTP QKAKKPRSQG
EVAVVTGYSS SKIWTDKYGR AKVSFPWDRE GKQDQDSSCW VRVSSPWQGA SYGAIYIPRV
GHEVVIGYHD NDPDKPYIAG RHVNQFHEPP WPLPANQALS GWLSEDLEGP ATNSVVTDDT
PGKLQVQVAS DHAQSRLVVG SNTRIDRRKG RSEARGEGFE LATDAHGVAR ANGSLLITTE
SRSGARAPAL DRGETVQRLV EAAEQHDVLA AAAVQAGAQV SQDRSALGQS LKALGTEIGD
AGHDGLGCPS KPHLVLAAAA DIAATATSNA HVHGGKNIAL TSGKHTSIST GGSLFAAARN
AVRLFAYQFG IRIISYAEDI NISALRKNLN LLAKLDITQS ANRITIKATE EVMLHGGDSY
ISLKNGKIKV GGGVYEVNAE VKNLPPKPMG VSADGLPDVQ ANDQMFRTLS PTGQPLPGVD
YRLTTQSGGH IFRTDSRGTS PALNTAEQES ATFQLHWDEF SAARENSSV