| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_2598 |
|---|
| Symbol | |
|---|
| ID | 6281466 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010681 |
|---|
| Strand | - |
|---|
| Start bp | 2939485 |
|---|
| End bp | 2940777 |
|---|
| Gene Length | 1293 bp |
|---|
| Protein Length | 430 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642622157 |
|---|
| Product | cytosine deaminase |
|---|
| Protein accession | YP_001896217 |
|---|
| Protein GI | 187924575 |
|---|
| COG category | [F] Nucleotide transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG0402] Cytosine deaminase and related metal-dependent hydrolases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.177516 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.0252433 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATCTGA TCATCCGCCG CGCGATGCTG CCGCCAGGCG CCGCGCCGCA ACATAAAGAG
CCGGTCGACA TCGGCATTGA AGCGGGCCGC ATCGTTGCGG TCGAACCGAA TCTGGCCGCC
AACGCGCACG AGGAAATCGA CGCCGCGGGC TCACTCGTCA CGCCGCCGTT CGTCGATCCG
CATTTCCATA TGGACGCAAC GCTCTCGTAC GGTCTGCCGC GCGTGAACGC GTCGGGCACG
CTGCTCGAAG GCATCGCGTT ATGGGGCGAA CTGAAGCCGG ACCTGACGCA GGAGGCGCTG
ATCGAGCGCG CGCTGCAGTA TTGCGACTGG GCCGTCGCGC GCGGATTGCT GGCCATTCGC
AGCCACGTGG ATGTGTGCGA TCCGCGCCTG CTCGCGGTCG AGGCGCTGGT CGAAGTGAAA
CGCCGCGTGG CGCCTTATCT TGATCTGCAA CTGGTGGCCT TTCCGCAAGA CGGCGTGCTG
CGCAGCCCGG GCGCTTTCGA GAACCTCAAG CGCTCGATCG CGATGGGTGT GGACGTGGTC
GGCGGCATTC CGCATTTCGA GCGCACCATG GCCGACGGCG CGCAGTCCGT GCGCCTGTTG
TGCGAGTACG CGGCGGAGCA GGGCTTGCGC GTCGACATGC ATTGCGATGA ATCGGACGAT
CCGATGTCGC GGCACATCGA GACGCTCGCG GCCGAAACGC ACCGGCTCGG TTTGCACGGG
CGCGTCACCG GTTCGCATCT GACCTCCATG CATTCCATGG ACAACTACTA CGTCAGCAAA
CTGCTGCCGC TGATGCGCGA GTCGGGCGTC GCGGCGATCG CGAATCCGCT GATCAACATC
ACGCTGCAAG GACGCAGCGA CACGTATCCG AAACGCCGCG GCATGACGCG CGTACCCGAG
ATGATGGCGG CCGGCATCAA CGTCGCATTC GGTCACGATT GCGTGATGGA CCCGTGGTAT
AGCCTCGGTT CGGGCGACAT GCTCGAAGTC GCGCACATGG GTTTGCATGT GGCGCAGATG
ACGGGCGTCG ACGGTATGCG CGCCTGTTTC GACGCGGTGA CGGTGAACGC TGCGCGCATT
CTCGGTCTGG AGGGCTATGG CGTCGCGCCG GGATGCGCGG CCAATCTCGT GCTGCTCGAC
GCGCGCGATC CGGTGGAAGC AATTCGTTTG CGCGCCGCGC GCCTTGCGGT GGTGAGCCGC
GGCAAGGTGG TGAGCCGTGC GCCGGCTGCG CGCGCGGCGC TGTCGCTCGA AGGCCGCCCT
GCGCAAGTGG ATTTCAAGCT GCATCGCGGC TGA
|
|---|
| Protein sequence | MDLIIRRAML PPGAAPQHKE PVDIGIEAGR IVAVEPNLAA NAHEEIDAAG SLVTPPFVDP
HFHMDATLSY GLPRVNASGT LLEGIALWGE LKPDLTQEAL IERALQYCDW AVARGLLAIR
SHVDVCDPRL LAVEALVEVK RRVAPYLDLQ LVAFPQDGVL RSPGAFENLK RSIAMGVDVV
GGIPHFERTM ADGAQSVRLL CEYAAEQGLR VDMHCDESDD PMSRHIETLA AETHRLGLHG
RVTGSHLTSM HSMDNYYVSK LLPLMRESGV AAIANPLINI TLQGRSDTYP KRRGMTRVPE
MMAAGINVAF GHDCVMDPWY SLGSGDMLEV AHMGLHVAQM TGVDGMRACF DAVTVNAARI
LGLEGYGVAP GCAANLVLLD ARDPVEAIRL RAARLAVVSR GKVVSRAPAA RAALSLEGRP
AQVDFKLHRG
|
|---|
| |