Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_2571 |
Symbol | lysS |
ID | 6282977 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010681 |
Strand | + |
Start bp | 2905648 |
End bp | 2907204 |
Gene Length | 1557 bp |
Protein Length | 518 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 642622130 |
Product | lysyl-tRNA synthetase |
Protein accession | YP_001896190 |
Protein GI | 187924548 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1190] Lysyl-tRNA synthetase (class II) |
TIGRFAM ID | [TIGR00499] lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.158431 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.0253603 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCGAAC CGACCCAGCC TAATGCGGCC CAGCCTGACG CGGCCCGACC CAACGTCGCG CCTGAGATGG ACGACAACAA GATCATGACC GAGCGCCGCG AAAAGCTGCG CGAACTGCGT GAGCAAGGCG TCGCCTATCC GAACGATTTC CGCCCCACGC ATCACGCGGA AGATCTGCAA TCGCAATACG AGCAATCCGA CAAGGAAGCG CTCGAAGCGA ATCCGCTCGA AGTCGCGATT GCCGGCCGCA TGATGCTCAA GCGCGTGATG GGCAAGGCGA GCTTCGCGAC CGTGCGCGAC GGTTCGGGTC AGATCCAGTT CTTCATCACG CCCACCGACG TCGGCCAGGA AACGTACGAC GCCTTCAAGA AGTGGGACAT GGGCGACATC GTCGCGGCGC GCGGCGTGCT GTTCCGCACC AACAAGGGCG AACTCTCGGT GCGCTGCACG GAGCTGCGTC TGCTGTCGAA GTCGCTGCGT CCGCTGCCGG ACAAGTTCCA CGGTCTCGCC GACCAGGAAA TGAAGTACCG CCAGCGATAT GTCGATCTGA TCGTCACGCC GGAAACGCGC AAGACTTTCG TCGCGCGCAC CAAGGCGATT TCGTCGATCC GCAAGTTCAT GGCCGAGGCC GACTTCATGG AAGTCGAAAC GCCCATGCTG CACCCCATTC CGGGTGGCGC GGCGGCCAAG CCGTTCACCA CGCACCACAA CGCGCTCGAC ATGCAGATGT TCCTGCGCAT CGCACCGGAG CTGTATCTGA AGCGGCTGGT GGTCGGCGGC TTCGAGCGTG TGTTCGAGAT CAACCGTAAC TTCCGCAATG AGGGCGTGTC CGTGCGCCAC AATCCGGAAT TCACGATGAT CGAGTTCTAC GCCGCGTACA CCGATTACAA GTGGCTGATG GACTTCACCG AACAGCTGAT CCGTCAGGCG GCGATCGATG CTTTGGGTAC CGCCACGATC ACGTACCAGG GCCGCGAACT CGATCTGGCG AAGCCGTTCC ATCGCCTCAC GATCACGCAA GCCATCCAGA AGTACGCGCC TCAATATACG AACGAGCAAC TCGCCGACAG CGCCTTCCTG CGCACCGAGT TGAAGAAGTT CGGCGTGGAT GCGTCGCAGC CGCAGTTTCT GAACGCGGGC GTCGGTTCGC TGCAGTTGGC ATTGTTCGAA GAAACCGCCG AGTCGCAATT GTGGGAGCCG ACGTACATCA TCGACTACCC GATCGAGGTT TCGCCGCTGG CGCGCGCGTC GGACAAGGTC GCAGGCATTA CCGAGCGTTT CGAGCTGTTC ATCACGGGCC GCGAGATCGC CAACGGCTTC TCGGAGCTGA ACGATCCGGA AGACCAGGCA GCGCGCTTCA AGAAGCAGGT CGACCAGAAA GAAGCCGGCG ACGAAGAAGC GATGTTCTAT GACGCGGACT ACATTCGCGC GCTCGAATAC GGCATGCCGC CGGCCGGCGG TTGCGGCATC GGCATCGACC GTCTGGTCAT GATGCTGACC GACAGCCCGA GCATCCGGGA TGTGATTCTG TTCCCGCATC TGCGTCGCGA AGACTGA
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Protein sequence | MTEPTQPNAA QPDAARPNVA PEMDDNKIMT ERREKLRELR EQGVAYPNDF RPTHHAEDLQ SQYEQSDKEA LEANPLEVAI AGRMMLKRVM GKASFATVRD GSGQIQFFIT PTDVGQETYD AFKKWDMGDI VAARGVLFRT NKGELSVRCT ELRLLSKSLR PLPDKFHGLA DQEMKYRQRY VDLIVTPETR KTFVARTKAI SSIRKFMAEA DFMEVETPML HPIPGGAAAK PFTTHHNALD MQMFLRIAPE LYLKRLVVGG FERVFEINRN FRNEGVSVRH NPEFTMIEFY AAYTDYKWLM DFTEQLIRQA AIDALGTATI TYQGRELDLA KPFHRLTITQ AIQKYAPQYT NEQLADSAFL RTELKKFGVD ASQPQFLNAG VGSLQLALFE ETAESQLWEP TYIIDYPIEV SPLARASDKV AGITERFELF ITGREIANGF SELNDPEDQA ARFKKQVDQK EAGDEEAMFY DADYIRALEY GMPPAGGCGI GIDRLVMMLT DSPSIRDVIL FPHLRRED
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