| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_2536 |
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| Symbol | hfq |
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| ID | 6282009 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010681 |
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| Strand | - |
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| Start bp | 2866143 |
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| End bp | 2866379 |
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| Gene Length | 237 bp |
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| Protein Length | 78 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 642622095 |
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| Product | RNA-binding protein Hfq |
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| Protein accession | YP_001896155 |
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| Protein GI | 187924513 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1923] Uncharacterized host factor I protein |
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| TIGRFAM ID | [TIGR02383] RNA chaperone Hfq |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.011646 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.0000364006 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGAGCAACA AAGGGCAATT GTTACAAGAC CCGTTTTTGA ACGCACTGCG TAAAGAGCAT
GTGCCGGTGT CGATCTATCT GGTCAACGGC ATCAAGCTTC AAGGGAACAT CGAATCGTTC
GACCAGTACG TCGTGTTGCT CCGGAATACG GTCACCCAGA TGGTTTACAA GCACGCAATC
TCGACAGTCG TGCCAGCCCG TCCGGTGAAT TTCCACCCGG ATTCTGAACA GTCCTAA
|
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| Protein sequence | MSNKGQLLQD PFLNALRKEH VPVSIYLVNG IKLQGNIESF DQYVVLLRNT VTQMVYKHAI
STVVPARPVN FHPDSEQS
|
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