| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_2478 |
|---|
| Symbol | |
|---|
| ID | 6283994 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010681 |
|---|
| Strand | + |
|---|
| Start bp | 2796727 |
|---|
| End bp | 2798034 |
|---|
| Gene Length | 1308 bp |
|---|
| Protein Length | 435 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 642622032 |
|---|
| Product | lysophospholipid transporter LplT |
|---|
| Protein accession | YP_001896098 |
|---|
| Protein GI | 187924456 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.00685032 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.000365442 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAG GTTTTTACAC CATCATGGCC GCGCAGTTTT TTTCGTCGCT GGCCGACAAT
GCGCTTCTGA TCGCTGCTAT CGCACTGCTG AAAGATCTTC ACGCCCCGAA CTGGATGACG
CCGCTGCTCA AGCTGTTCTT TGTGCTGTCG TACGTCGTTC TCGCCGCCTT CGTGGGCGCC
TTCGCCGACT CCCGTCCGAA AGGACGCGTG ATGTTCATCA CCAACACCAT CAAGGTGCTC
GGTTGCATCA CGATGCTGGT GGGCGCGCAT CCGCTGCTCG CGTATGGGAT CGTCGGCTTC
GGCGCGGCGG CCTACTCGCC CGCCAAATAC GGCATTCTCA CCGAGCTGCT GCCGCCTGAC
CGGCTGGTCG CCGCGAACGG CTGGATCGAA GGCACCACTG TGGGCTCGAT CATTCTCGGC
ACTGTGCTAG GCGGCGCGCT CATCAGCCCG CACATTGCCG CGCCGATCCT GCGGCACCAC
ATTCCCTCGG TCAACACGCC CGCCGAAGCC GCGATGCTGG TCATCATGGC CATCTACGTG
GTCGCCGCGC TGTTCAATCT GCGCATTCCC GACACCGGCG CGCGCTATCC GAAACAGGAA
CGCGGCCCGA TCAAACTCGT CACCGATTTC GCCGACTGTT TCCTCGTGCT GTGGCGCGAC
AAGCTCGGCC AGATTTCGCT TGCCGTCACC ACGCTCTTCT GGGGCGCGGG CGCAACGCTG
CAATTCATCG TGCTGAAGTG GGCCGAAGTG TCGCTGAACA TGTCGCTCTC CGAAGCGGCC
ATTCTGCAGG CGGTGGTGGC CGTGGGCGTG GCGGCCGGCG CGATTTTCGC AGCCTCGCGC
GTGCCGCTGA AGAAGTCGCT CTCGGTATTG CCGGTCGGCA TCATGATGGG CATTGCCGTG
ATGCTGATGG CGTTCTACAC GCGCGACCTG TTCCCCGCGC ATTGGGGCAT CTATTTCGGC
CGCTTGCATG TGCCGGGCTA TCTGATCGTC GCGTACATTT TCCTGATGAT CGTCGGCGGC
CTGTCGGGCT TTTTTGTCGT GCCGATGAAC GCGCTGCTGC AGCATCGCGG GCACGTGCTG
CTGTCGGCCG GTCACTCGAT CGCCGTGCAG AACTTCAACG AAAACCTCTC CGTGCTCGTG
ATGCTGTGCC TCTATGCCGT GCTGGTGTGG CTCGATGTGC CGGTCACGGC GGTGATCGTG
CTGTTCGGGA CCTTCGTCTG CGTGATGATG TGGTTCGTGA TGCGGCGCCA CCAGGCCAAC
CAGCGCGCGT TCGACTCGGT CGCGCTGATC GGCGAAGTCA AGCACTGA
|
|---|
| Protein sequence | MKKGFYTIMA AQFFSSLADN ALLIAAIALL KDLHAPNWMT PLLKLFFVLS YVVLAAFVGA
FADSRPKGRV MFITNTIKVL GCITMLVGAH PLLAYGIVGF GAAAYSPAKY GILTELLPPD
RLVAANGWIE GTTVGSIILG TVLGGALISP HIAAPILRHH IPSVNTPAEA AMLVIMAIYV
VAALFNLRIP DTGARYPKQE RGPIKLVTDF ADCFLVLWRD KLGQISLAVT TLFWGAGATL
QFIVLKWAEV SLNMSLSEAA ILQAVVAVGV AAGAIFAASR VPLKKSLSVL PVGIMMGIAV
MLMAFYTRDL FPAHWGIYFG RLHVPGYLIV AYIFLMIVGG LSGFFVVPMN ALLQHRGHVL
LSAGHSIAVQ NFNENLSVLV MLCLYAVLVW LDVPVTAVIV LFGTFVCVMM WFVMRRHQAN
QRAFDSVALI GEVKH
|
|---|
| |