| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_2469 |
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| Symbol | |
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| ID | 6283313 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010681 |
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| Strand | + |
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| Start bp | 2785474 |
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| End bp | 2786613 |
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| Gene Length | 1140 bp |
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| Protein Length | 379 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642622023 |
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| Product | succinyl-diaminopimelate desuccinylase |
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| Protein accession | YP_001896089 |
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| Protein GI | 187924447 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
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| TIGRFAM ID | [TIGR01246] succinyl-diaminopimelate desuccinylase, proteobacterial clade |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.167643 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0000634543 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCCGGCA CCCTCGCCCT TACCGAACAA CTGATCGCGC GCGCGTCCGT CACGCCCGAC
GACCAGCATT GCCAGCGCCT CCTGATCGAG CGCCTCGCCG CACTCGGCTT CGAGCACGAG
ACCATCGAAT CGAACGGCGT GACCAACCTG TGGGCCGTCA AACGCGGCGT CGACGGCACT
GCGGGGAAGC TGCTCGCGTT CGCCGGCCAC ACTGACGTGG TGCCGACCGG CCCGCTCGAA
CAATGGCGCT CGGCGCCGTT CGAGCCGACC CATCGCGACG GCAAACTTTA CGGCCGCGGC
GCGGCGGACA TGAAAGCGTC GATCGCGGGC TTCGTGGTGG CGAGCGAGGA GTTCGTCGCC
GCGCACCCGG CGCACCGCGG CACGATCGCC TTCCTGATCA CGAGCGACGA AGAAGGCCCC
GCCACCGACG GCACCGTGAA GGTCGTCGAA GCCTTGCAGG AACGCGGCGA GCGCATGGAC
TACTGCATCG TCGGCGAGCC GACTTCGAGC GCGCAGTTCG GCGACATGGT GAAGAACGGC
CGGCGCGGTT CGATGTCGGG CAAGCTGATC GTCAAGGGCG TACAAGGCCA TATCGCCTAT
CCGCATCTGG CGAAGAATCC GGTGCATCTG CTCGCGCCCG CGCTGGCCGA ACTGGTCGCC
GAACGCTGGG ACGACGGCAA CGAATATTTT CCGCCCACCA CATGGCAGGT GTCGAATATT
CACAGCGGCA CCGGCGCGAC CAACGTGATT CCGGGCCATG CGGACGTGAT GTTCAACTTC
CGCTTCTCGA CGGCGAGCAC GGTGGAAGGT CTGCAAGCCC GCGTGCATGC GATCCTCGAC
AAACACGGCC TCGAATACGA TCTGCAATGG ACCGTGAGCG GGCTGCCGTT CCTCACGCCG
CGCGGCGATC TGTCGAACGC GCTCGCCAAA GCCATCAAGG ACGAAACCGG CCTGAACACC
GAACTGTCCA CCACCGGCGG CACTTCAGAC GGCCGCTTCA TCGCGCGCAT CTGCAAGCAG
GTGATCGAGT TCGGCCCGTT GAACGCCAGC ATCCACAAGA TCGACGAACA TATCGAAGTC
GCACACATCG AGCCGCTGAA GAACGTGTAT CGCCGCGTGC TCGAACAACT GATTGCCTGA
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| Protein sequence | MSGTLALTEQ LIARASVTPD DQHCQRLLIE RLAALGFEHE TIESNGVTNL WAVKRGVDGT
AGKLLAFAGH TDVVPTGPLE QWRSAPFEPT HRDGKLYGRG AADMKASIAG FVVASEEFVA
AHPAHRGTIA FLITSDEEGP ATDGTVKVVE ALQERGERMD YCIVGEPTSS AQFGDMVKNG
RRGSMSGKLI VKGVQGHIAY PHLAKNPVHL LAPALAELVA ERWDDGNEYF PPTTWQVSNI
HSGTGATNVI PGHADVMFNF RFSTASTVEG LQARVHAILD KHGLEYDLQW TVSGLPFLTP
RGDLSNALAK AIKDETGLNT ELSTTGGTSD GRFIARICKQ VIEFGPLNAS IHKIDEHIEV
AHIEPLKNVY RRVLEQLIA
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