| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_2088 |
|---|
| Symbol | |
|---|
| ID | 6284585 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010681 |
|---|
| Strand | - |
|---|
| Start bp | 2354381 |
|---|
| End bp | 2355751 |
|---|
| Gene Length | 1371 bp |
|---|
| Protein Length | 456 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642621649 |
|---|
| Product | major facilitator superfamily MFS_1 |
|---|
| Protein accession | YP_001895715 |
|---|
| Protein GI | 187924073 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0738] Fucose permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.565943 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGATGA TTGCCGCCCG TATCGAGCGT TTGCCGTTTT CAGGTTTTCA CCGCCGTCTG
CTGCTGATGG GCGGCCTCGG TTATACCTTC GACGCGATGG ACGCCGCCGT GCTCGCGTTT
CTGCTGCCGG TGTTGCGTAC GCAATGGGTT TTGACGAGCG TGCAGACCGG CGTGCTGGGA
AGCGGTACGT TCATGGGCTA TTTCGTCGGC GCGATGCTCG CGGGCATGCT CGGCGACGTC
ATCGGCCGAC GCAAGGTCAT GATGTATGCG CTCGTGATCT ATTGTGTCGC CTCTCTTGCC
AGCGCGCTCG CGAACGACTG GGGCTTTTTT CTGGCGACGC GTATTGTCGC CGGCCTGGGG
ACGGGAGCGG AAAGCGCCAT CGTCGCGCCG TTTCTTTCGG AGTTCGTGGC GCGACGGTAT
CGCGGCAGTT TCACCGGCAG CCTCGCGGGA TTCTTCTCGT TTGGCTTCGT GGCGGCGGCA
TTGCTCGGCT ATCTGGTGAT CCCTCTCGCA CCCAATGCAT GGCGCGCGGT CATGGTCATC
ACCGCACTGC CCATCGTGAT GCTGCTCTGG TGGCGCCGCG CATTGCCCGA GTCGCCGCGC
TGGCTCGAGG CGCGCGACCG CCACGCGGAA GCCGATGCGA TCGTGTCGCG AATGGAAGCG
GAAGTGCTGA AAGCCGGCGT GCAACTGGAG CCGCTGCCTG CCGCGCGCGA GGAAGCCGTT
CCGCTCGCGG CCGGACGGGC TTCGATCATC GCGAACGTCA AGGCGTTATG GGCCGCGAAG
CTCGCGCGCA TCACGGCCAT GACGTGGCTG ATGTGGCTGT CCATCACGTT CAGCTATTAC
GCGTTTTTCA CGTGGATTCC CGGCTTGCTG GTTCAGAACG GAATGACGAT CACGCGAAGT
TTTTCGTATT CGCTCGTGAT TTACATCGCG CAGATTCCCG GCTACTTTTC GGGCGCGTGG
CTCAACGAGA AGATCGGCCG GCAGGCGACG ATTGCGTCGT ACATGATATT GGGCGGCATC
TCGGCGCTTG GGCTCGCGTT GACGGGTACG GATACCGGCA TCATGGTGTC GGGCATCCTG
CTTTCGTTCT TCATGAACGG CACCTATGCC GGCGTTTATG CCTATACCCC CGAGGTCTTT
CCCACCGACG TGCGCGCGAC CGGCACCGGG CTCGCATCGT CGATTGGCCG GCTGGGCGCG
ATCGCCGCGC CTATCCTCGT CGGGTATGTC TACCCGCGGC TGGGTTTTGC CGGCGTGTTC
GGGGCGACGA CGCTGGTGCT GCTGATCGGT GCGGCGGCGG TGTTGCTCAT GGGCGTACCG
ACGCGCGGAA GATCGCTGGA AGACATTGCA GCAGGGCAGA TCAACCCGTG A
|
|---|
| Protein sequence | MSMIAARIER LPFSGFHRRL LLMGGLGYTF DAMDAAVLAF LLPVLRTQWV LTSVQTGVLG
SGTFMGYFVG AMLAGMLGDV IGRRKVMMYA LVIYCVASLA SALANDWGFF LATRIVAGLG
TGAESAIVAP FLSEFVARRY RGSFTGSLAG FFSFGFVAAA LLGYLVIPLA PNAWRAVMVI
TALPIVMLLW WRRALPESPR WLEARDRHAE ADAIVSRMEA EVLKAGVQLE PLPAAREEAV
PLAAGRASII ANVKALWAAK LARITAMTWL MWLSITFSYY AFFTWIPGLL VQNGMTITRS
FSYSLVIYIA QIPGYFSGAW LNEKIGRQAT IASYMILGGI SALGLALTGT DTGIMVSGIL
LSFFMNGTYA GVYAYTPEVF PTDVRATGTG LASSIGRLGA IAAPILVGYV YPRLGFAGVF
GATTLVLLIG AAAVLLMGVP TRGRSLEDIA AGQINP
|
|---|
| |