| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_1898 |
|---|
| Symbol | |
|---|
| ID | 6284409 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010681 |
|---|
| Strand | + |
|---|
| Start bp | 2130806 |
|---|
| End bp | 2131774 |
|---|
| Gene Length | 969 bp |
|---|
| Protein Length | 322 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642621462 |
|---|
| Product | transcriptional regulator, LysR family |
|---|
| Protein accession | YP_001895530 |
|---|
| Protein GI | 187923888 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.113483 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.573852 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATCTCA AGCACATCGA GGCGTTCCGC GCGGTCATGG TGTCGGGGTC TATGACCGCC
GCGGCCAAGG CCCTTTTCAC GTCGCAGCCG AACGTGAGCC GTCTGATCGC GCAACTCGAG
CGCGATACGG GGCTGCAGCT CTTCCAGCGC AGCGGCGTGC GGCTGATTCC CACGAGCGAG
GGCGAGGCGT TCTTTCGCGA AGTCGAGCGC GCGTTTGTCG GCTTGCAGGG TTTGGCGAAT
GCCGCGGCGC AGATTCGCAA TCTCGGCAGC GGCCGTCTGC GCATCGCGGC GATGCCGTCG
GCGGGCATGA CGCTGGTGCC GCACGCCATC AAGCGGTTTG TCGAGCTGTT TCCGGATGTC
ACCGTGTCGC TGCACGTGAA TACGTCGGGC ACGGTCAATC ATTGGACGGC CTCGCAGTTC
TGCGATCTCG GCGTGGCGGT GTATGTCAGC GAGGCATCCG ATTGCGAAGT CGAACAGCTG
GCGGATGTGG CCGCCGTGTG TGTGATGCCG GCGGCGCATC GGCTGGCGAA GAAGCGCAGC
ATCAAGCCGG AAGATCTGGA AGGCGAGCCG TTCATTTCGC TATGCCACGG CGACGGCACG
CGCGCCTTGA TGGACGAAGT GTTCCTGCGC GCGGGCGTGC AGCGCGTCAT GTCGATCGAG
GCGCAATACG CCGCGATGTG CTGCGAGATG GTTCGCCACG GCATGGGCGT GACGCTCGCG
CATCCCATCG TCGCGCGCGA CTTCGCCGGG CCGGAAATCG CGATTCGCCC GTTCCTGCCG
GCTACGCGTT TTCAGACCTA TCTGCTATTT CCGCCGCATA GGCCGCGAGA GCGGCTGGCG
TCGGCGTTCG TCGAGGTCTT GCGGGCGCTG CACGAGGAAC TGCTCGCCGA GGTCGTGGCG
CCGGCGCGAA GCGCGGCAGG ACGCGGGCGG GCGCGGTCGC GAGCTGAGGC GGCAGGGGAC
AGGCTTTGA
|
|---|
| Protein sequence | MNLKHIEAFR AVMVSGSMTA AAKALFTSQP NVSRLIAQLE RDTGLQLFQR SGVRLIPTSE
GEAFFREVER AFVGLQGLAN AAAQIRNLGS GRLRIAAMPS AGMTLVPHAI KRFVELFPDV
TVSLHVNTSG TVNHWTASQF CDLGVAVYVS EASDCEVEQL ADVAAVCVMP AAHRLAKKRS
IKPEDLEGEP FISLCHGDGT RALMDEVFLR AGVQRVMSIE AQYAAMCCEM VRHGMGVTLA
HPIVARDFAG PEIAIRPFLP ATRFQTYLLF PPHRPRERLA SAFVEVLRAL HEELLAEVVA
PARSAAGRGR ARSRAEAAGD RL
|
|---|
| |