| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_1683 |
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| Symbol | |
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| ID | 6284122 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010681 |
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| Strand | + |
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| Start bp | 1905532 |
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| End bp | 1911033 |
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| Gene Length | 5502 bp |
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| Protein Length | 1833 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 642621244 |
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| Product | PAS sensor protein |
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| Protein accession | YP_001895317 |
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| Protein GI | 187923675 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair
[R] General function prediction only
[T] Signal transduction mechanisms |
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| COG ID | [COG0515] Serine/threonine protein kinase
[COG3852] Signal transduction histidine kinase, nitrogen specific
[COG3899] Predicted ATPase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 0.725143 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGATCTCA CCGGATATGA GTTGGAGCCG CTGCACGACG ACGGCGACTT CTCCCTCTAT
CGCGCCCGCA GACCCCGCCA TGCCGTCTCG GTGCTCGCGC TGGTCGCCAC GCGCCCGGCC
TCGCACAGCC TCACCCGGCT CGAGCACGAA TACGGATTAG CCCCGCTGCT CGATTCCAGC
TGGGCGGCTC AGCCGCTCGC GCTGTACCGC CGCAGGGAGC CGCCCATGCT CGTTCTCGAC
GACGACGGCG GCGAGCCTCT CTATCGCTCG CTGGGCCGTC CGCTGGAGCT CACGCGCTGG
TTGCGCATCG CCGTCAATCT GGCGCGGGTA ATCGGCCACG TTCACCGCTG CGGTCTCGTT
CACAAAGACA TCAAGCCGGC GAATGTGCTC GTCGACGGGA ACGGCAACGT GCGGCTCACT
GGCTTCGGCA TCGCTTCGCA ACTGCCGCAT GAACATCAGC CGCCCGCGCC GCCGGAGATC
GTGGCCGGGA CTTTCGCGTA CATGGCGCCC GAGCAGACGG GCCGCATGAA CCGTTCGATC
GACACGCGCA GCGATCTGTA CTCGCTCGGC GTCACCCTGT ACGAGATGCT CACCGGCGCG
CTGCCGTTCA CCGCATCGGA CGCGATGGAA TGGATTCATT GCCACATTGC GCGCAGGCCG
ACGCCGCCAG GCGAGCGCGT CGACGGTCTG CCGAAACCGG TCGAGGGGAT CGTGCTGAAG
CTCCTCGCCA AGGCCGCCGA GGACCGTTAC CAGACCGCGG CGGGTGTCGA AGCCGACTTG
CGGTCGTGCC TCGCGGCATG GGAGGCGCAC CATCGCATCC AAGCGTTCCC GCTGGGCGCG
CACGACGCGT CCGACCGCTT GCTGGTGCCC GAAAAACTGT ACGGGCGCGA GGCGCAGATC
GAAGCGCTCG TGAGCGCTTT CGATCGCGTC GTGGGCAGCG GGGCGGTCGA ACTGGTGTTG
ATCTCGGGCT ATCCGGGCAT CGGCAAGTCG TCGGTCGTCA ACGAGTTGCA CAGGGTGCTG
GTGCCGCCGC GCGGCCTGTT CGCGTCCGGC AAGTTCGATC AGTACAAGCG CGACATCCCT
TATGTGCCAT TTGCTCAAGC GTTCCAGACG CTCGTACGCA ACCTGCTGAG CCAGAGCGAC
GCGGAGGTCG AGCCGTGGCG GCACGCGCTG TTGGAGGCGC TCGGGCCCAA CGCTCAGTTG
ATGGTGAATC TGATTCCCGA GCTCGCGCTG ATCATCGGCG AGCAGCCGCC CGCGCCCGTG
CTGCCTCCGC AGGACGCGCA AAACCGCTTC CAGATCGTGT TTCGACGTTT TCTCGGCGTG
TTCGCGCGAC CGGAGCATCC GCTCGCGCTG TTTATCGACG ACCTGCAATG GGTCGATACG
GCGACGCTCG ACCTGCTCGC GCATCTGGTC ACGCATCCGG AGGTGAAGCA CGTTCTGCTG
GTCGGCGCGT ACCGGGACAA CGAGGTGGAT GCGTCGCATC CGTTCGCGCG CACGTTGGAG
TCGATCAGCC ATGCCGAAGG CAAGGTGCAG CGGATCGAAC TCGCGCCGCT CACGACGGAG
AACGTCACGC AGCTCGTCGC TGATTCGCTT CACTGCGACG GCGCGAGCGC CGGCCCGCTC
GCGCAACTGG TGCACGAGAA GACCGGCGGC AACCCATTCT TCGCGATCCA GTTTCTGACC
GCACTCGCCG ATGAAGACCT GCTCACTTTC GATCAGCGCG CCGCGGGGTG GTGCTGGGAT
TTGTGGCGCA TCCGTTCGAA GGGTTTTACC GAGAACGTCG CCGATCTGAT GGCGGCGAAG
CTAAGCCGCT TGCCTGCGCC GACGCGCGAC GCATTGGGGC AACTGGCGTG CCTCGGCAAC
ATCGCCGAGG TGATCGCACT GACGTGGGTT CAGGGCGGAT CCGAAGAGAC GATGCACGCG
AACCTCTGGG AAGCCGTGCG AACGGGACTC GTTTTTCGCG TGGCCAACGC TTATGAATTC
GCACACGACC GCGTGCAGGA GGCCGCTTAC GCGCTGATTC CCGCCGATGA GCGCAGCGCC
GCGCATCTGC GGATCGGCCG GGCGCTGGTG TCGCGGACGC CGTCGGACGC GCTGGAAGAT
GCCATCTTCG ACATCGTCAA CCATCTCAAT CGCGGCGCGG CGCTGATCGT GACGGAGCCG
GAGCGCGAGC AGGCCGTTGC GTTGAATCTC ATCGCGGGGC GGCGCGCGAT GAATTCGACG
GCCTACGCGG CCGCGCGCAG CTATCTGGCG CAGGGCGCGG CGCTGCTGTC GCCCGACGCA
TGGGCGCAGC GTTACGACAA CACCTTCGAT CTCTATCTCG CGTTTTCGGA GTGCGAGTAT
CTGGTCGGCG ATTTTGCGAA AGCCGACGCG CTGGTCGACA TGATGCTCGC GAGAGCGCGC
TCCAATCTCG ATCGTGCGAA GATTTTCAGT CTGCGCATCG AGTTGTATCA GCTCGCCGGA
AGATATGACG AGAGCTTCGC GGTCGCGCTG GCTGCGCTGC GCGATTTCGG CATCCTCTTT
CCTGAAAACG ATCAGGACAT CCAGGCGGCC CTCGACCACG CATTGCGGGA CGTTCACGTC
AATCAGGCCG GGCGTCGCGT CGACGAACTC GTCGACGTGC CGGTGGCGAC GGATCCCGCG
ATCCGTGCAA TCGTCAATCT TCTGCTTCAG GCGATGAACT GCGCTTTCGC CGCCCGGCCC
GCGTTCTATC CGCTCATCAC CCTGAAGGCG GTCAACCTCT CCTTGCAGCA CGGCAATACC
GAGAACTCCA GTTTTGCTTA CGGCAACTAC GCGTTGATGC TGGTGTCCCT GATCGGCGAT
ATCCCCACCG CAGTGCAAGT TTCAGAGATG TCGCTCAAGC TCAACGAGAA GTTCGGCAAT
CGGCGCCTGA ATGGCAAGCT GCTGCACCTA TATGGCGCGC ACGTCAATTT CTGGCGCTGC
CACATTGCAA ACAATCTGCC GGTGCTCGAA CGGGCCACCG CTGCATGCCT GGAAGCGGGC
GACCTGGTTT TTGCAGGCAA TGTAGCCTTC AACGCGGTTT GGCAGACGAT CGAGAAGGGT
GCTGCACTCG AAGACGTGCA GGCGCTCGCG GAAAAGTACG CGGCGCTCGC GCGCGAGAGT
CACAACGACG CGGTGTATGA GTTGATCCGC GTCGAGCGGC AATTCGTCAT CAGTCTTCGC
GGCAAGACGA CCGAACCGTT GAACCTGAAC GACGAGACAT TCGACGAAAC AGCCTGCTTC
GAGGCCATCG TCCAATCGAA TTTCGGCTGC GCCATCGGCG TTTATCGCAT CATCAAGGTC
GTGCTTGCTT TCCTCGATGG CCGCTATTCA GAGGCGTTAG AGGCGGCTGA CCGGGCGGAG
GCGGTCCTCA GTTCCGTCAT GGCGCTGGCG ATCGAACCGA CCTATCACTT CTTTCATGCG
CTCATCTTGA CGGCGCTTTA TCCGCAGGTG TCCGGGGAAC AGCAGCAAGC CTGCAAGCAC
ATTCTCGCAG CGAAACTCAG AAAGCTCGAA ATGTGGGCCG AGCACTGCCC GGAGAACTAT
CAGAACCGCT ATGCGCTTGT CTGTGCGGAG CTCGCGCGCG TGGAGGGCCG CGATCTCGAC
GCCATGCGCC TCTATGAACA GGCTGTCCAC TCCGCTCATG AGAACGGCTT TCCACACCAC
GAAGGCATCG CCAACGAACT CGCCGGTCGC TTCTATTTAA GTCGCAGTCT CAGAACGAGC
GCCGACGCGT ATTTGCGCAA CGCGCGTCAT TGCTTCGCCT TGTGGGGCGC GGACGGCAAA
GTCGCGCAAC TCGACGCGGA GTTTCCGCGC CTCGCCAACC AGGACGGAGG CAATGCGACG
TCGACGCTCA GCTTCGATTG GCGGCAATTC GACGCCGCGA CGCTGCTCAA GGCGTCGCAA
GCCCTTTCCA GCGAGATCGA ACTGGATGGC CTGATCGAGC GCCTGATGAC GATAGCGCTG
CAGACCTCAG GCGCCGATCG CGGCCTGCTC GTTGTGCCGC AGCAGCCGGA CGGCTACCGG
ATCGAAGCAG AAGCACGCAT CAATGGACAA GGGATTGCGC TGAACCGGGA GCCGCTTGCC
CATTTCGCCG TTCCTGCCGG CATTCTGCGT TACGTGATCC ATACGCAAAA GAGCGTCATC
ATCGACGATG CATTGACACC CAATATGTTC TCGCAGGACA GCTACGTGGC AAGTGGCGCG
ACGCGCTCCC TGTTCTGCCT GCCGCTGGTC AGACAGGGCA CGCTCAGCGG CCTCCTGTAT
CTCGAGAACA CGGCTACGTC GCATGTCTTT ACGGCGCGCC GTTCCTCGCT GCTCGATTTG
CTGGCGTCAC AGGCGGCCAT TTCGCTTGAG AACACCCGTC TTTATGCCGA TCTCCAGGAA
CGCGAGGCAA AGGTTCGGCG GCTGGTGGAC TCCAACATCA TCGGGATCCA TATCTGGGAC
TTCGAAGGCG GCGTGGTCGA AGCAAACGAC GCTTTTCTGC GCATCGTGGG TTACAGCAGA
GATGATCTCG TCTCAGCGCG TATTCGCTGG CCCGATCTGA CGCCGCCCGA GTGGCGTGAA
CTCGACGAAC GGGTGAGGGT GGAATTGACG ACCACGGGCA GCGCCAAGCC GTTCGAGAAA
GAATACATCC GCAAGGATGG CAGCCGTGTG CCCGTGCTGG TCGGCGCGGC GGCGTTCGGC
GACCGCGAGG GGCAGGGCGT CGCTTTCATA CTCGACCTGA CCGACCAGAA ACGGGCGCAA
CAGCACGTGC GCGACAGCGA ACGGCGATAT GTCGGACTCC AGATGGAGCT GGCGCATTCC
AATCGCGTGG CGACGATGGG CCAGCTATCG GCGTCGATTG CCCACGAAGT GAAGCAACCC
ATTACCGCAA CGGTCGCCTA CGCCAGTGCG GCCTTGCGCT GGCTGGCGGC GCGCCCGCCC
AATCTGGACG AAGTGCGCGA AGCGCTCAAC CGGATCGTCG CGGATGGTGG CCGCGCCAAT
AGCATCGTCG ACCGCACCCG CGCTTTCTTT AAAAAGGAGC CGCAGCGAAA AGACGGACTC
GACATCAACG AAACGATTCT CGAATTGATC GCGTTCATGC GAAGCGAAGC CAGCAAACAC
GGTGTCGAGT TAAGCGCTAA GCTGGCTGAT GGATTGCCGC AGATCCACGG CGATCGGGTG
CAACTGCAGC AAGTCATGCT GAATCTGATG ATCAACGCTC TTGAAGCGAT GAGCGTTAAG
GAAGCCGGCG AGCGAACGCT TGTGATCCGA TCCGGCAGGT CCGGTATCGA CGAACTCTGC
ATTAGCGTAG AGGATTCCGG ACCGGGTCTC GACACCGAAC ATCCGGAAGG CGTTTTCGAG
GCATTTTTTA CGACCAAACC CAACGGGCTG GGGATGGGGC TGCCGATCTG CCGCTCGATC
GTGGAAAGTC ACGGCGGACG GCTATGGGTG ACGTCGAACT CTGCGGGCGG CGCCACGTTT
CAATTCACGT TGCCTGCGCA AGGCGACGTA GCGCATACGT AG
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| Protein sequence | MDLTGYELEP LHDDGDFSLY RARRPRHAVS VLALVATRPA SHSLTRLEHE YGLAPLLDSS
WAAQPLALYR RREPPMLVLD DDGGEPLYRS LGRPLELTRW LRIAVNLARV IGHVHRCGLV
HKDIKPANVL VDGNGNVRLT GFGIASQLPH EHQPPAPPEI VAGTFAYMAP EQTGRMNRSI
DTRSDLYSLG VTLYEMLTGA LPFTASDAME WIHCHIARRP TPPGERVDGL PKPVEGIVLK
LLAKAAEDRY QTAAGVEADL RSCLAAWEAH HRIQAFPLGA HDASDRLLVP EKLYGREAQI
EALVSAFDRV VGSGAVELVL ISGYPGIGKS SVVNELHRVL VPPRGLFASG KFDQYKRDIP
YVPFAQAFQT LVRNLLSQSD AEVEPWRHAL LEALGPNAQL MVNLIPELAL IIGEQPPAPV
LPPQDAQNRF QIVFRRFLGV FARPEHPLAL FIDDLQWVDT ATLDLLAHLV THPEVKHVLL
VGAYRDNEVD ASHPFARTLE SISHAEGKVQ RIELAPLTTE NVTQLVADSL HCDGASAGPL
AQLVHEKTGG NPFFAIQFLT ALADEDLLTF DQRAAGWCWD LWRIRSKGFT ENVADLMAAK
LSRLPAPTRD ALGQLACLGN IAEVIALTWV QGGSEETMHA NLWEAVRTGL VFRVANAYEF
AHDRVQEAAY ALIPADERSA AHLRIGRALV SRTPSDALED AIFDIVNHLN RGAALIVTEP
EREQAVALNL IAGRRAMNST AYAAARSYLA QGAALLSPDA WAQRYDNTFD LYLAFSECEY
LVGDFAKADA LVDMMLARAR SNLDRAKIFS LRIELYQLAG RYDESFAVAL AALRDFGILF
PENDQDIQAA LDHALRDVHV NQAGRRVDEL VDVPVATDPA IRAIVNLLLQ AMNCAFAARP
AFYPLITLKA VNLSLQHGNT ENSSFAYGNY ALMLVSLIGD IPTAVQVSEM SLKLNEKFGN
RRLNGKLLHL YGAHVNFWRC HIANNLPVLE RATAACLEAG DLVFAGNVAF NAVWQTIEKG
AALEDVQALA EKYAALARES HNDAVYELIR VERQFVISLR GKTTEPLNLN DETFDETACF
EAIVQSNFGC AIGVYRIIKV VLAFLDGRYS EALEAADRAE AVLSSVMALA IEPTYHFFHA
LILTALYPQV SGEQQQACKH ILAAKLRKLE MWAEHCPENY QNRYALVCAE LARVEGRDLD
AMRLYEQAVH SAHENGFPHH EGIANELAGR FYLSRSLRTS ADAYLRNARH CFALWGADGK
VAQLDAEFPR LANQDGGNAT STLSFDWRQF DAATLLKASQ ALSSEIELDG LIERLMTIAL
QTSGADRGLL VVPQQPDGYR IEAEARINGQ GIALNREPLA HFAVPAGILR YVIHTQKSVI
IDDALTPNMF SQDSYVASGA TRSLFCLPLV RQGTLSGLLY LENTATSHVF TARRSSLLDL
LASQAAISLE NTRLYADLQE REAKVRRLVD SNIIGIHIWD FEGGVVEAND AFLRIVGYSR
DDLVSARIRW PDLTPPEWRE LDERVRVELT TTGSAKPFEK EYIRKDGSRV PVLVGAAAFG
DREGQGVAFI LDLTDQKRAQ QHVRDSERRY VGLQMELAHS NRVATMGQLS ASIAHEVKQP
ITATVAYASA ALRWLAARPP NLDEVREALN RIVADGGRAN SIVDRTRAFF KKEPQRKDGL
DINETILELI AFMRSEASKH GVELSAKLAD GLPQIHGDRV QLQQVMLNLM INALEAMSVK
EAGERTLVIR SGRSGIDELC ISVEDSGPGL DTEHPEGVFE AFFTTKPNGL GMGLPICRSI
VESHGGRLWV TSNSAGGATF QFTLPAQGDV AHT
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