Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_1636 |
Symbol | |
ID | 6284570 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010681 |
Strand | - |
Start bp | 1846099 |
End bp | 1847373 |
Gene Length | 1275 bp |
Protein Length | 424 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 642621197 |
Product | efflux pump membrane protein |
Protein accession | YP_001895270 |
Protein GI | 187923628 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | [TIGR00998] efflux pump membrane protein (multidrug resistance protein A) |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.00067211 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGAGCACCA CCCAACAGCC CGCGGCAACT ACACAGCCGA CTCAATCGGC CCCGCAGCCG ACGCAACCGC CGGCGCAGCC ACCGGCGAAC AACGGCAAAC GCAAGCGCAT GATGACGCTG CTCGTCATCG TGATCCTGAT CGCCGCGATC GCTTATGGCC TGTACTACTT CCTCGTCGCG CGCTTCCATG AAGACACCGA CGACGCGTAC GTGAACGGCA ATGTCGTGCA GATCACGCCG CAGGTTACCG GCACGGTCGT CGCCGTGAAC GCGGACGACA CGCAAACGGT GAAGGTGGGC GACCCGCTCG TCGTGCTCGA TCCTGCCGAC GCCCGCGTCG CGCTGGAACA GGCCGAAGCG AACCTCGCGC AGACGGTGCG TCAGGTGCGC GGCCTGTTCG CCGACGACAA TCAATATCAG GCGCAAGTGG CCCAGCGCCA AGCCGATCTA TCGCGCGCCC AGGACGACCT GAAGCGCCGC CTGACGGTCG CGCAAACCGG CGCGGTGTCG CAAGAAGAAA TCTCGCACGC CCGCGACGCC GTGAAGAGCG CGCAAGCCGC CGTCGACGCC GCCCAGCAGC AATTGAACTC GAACCGCGCG CTGACCGCCA ACACCACGAT CGCGAATCAC CCGAACGTGC AGGCCGCCGC CGCGAAGGTC CGCGACGCGT ACCTGAACAA CGCGCGTAAC AACCTGCCGG CGCCGGTCAC CGGCTACGTG GCGAAGCGCT CGGTGCAGGT CGGCCAGCGC GTCTCGCCGG GCACCCCGCT GATGGCGATC GTGCCGCTCG GCGGCGTGTG GGTCGACGCG AACTTCAAGG AAGTACAACT CAAGCACATG CGCATCGGCC AGCCGGTCGA ACTGACGGCC GACGTGTACG GTTCGTCGGT CGTGTACCAC GGCAAGGTGG TCGGCTTCTC GGCGGGCACG GGTTCGGCGT TCTCGCTGCT GCCCGCGCAG AACGCGACCG GCAACTGGAT CAAGGTGGTG CAGCGTCTGC CGGTGCGGAT CGCGCTCGAT CCGAAGGAAC TGGAACAGCA TCCGCTGCGT ATCGGCCTGT CCATGCAAGC CGACGTCAGC ATCAAGGACG ACAACGGCGG CCAGCTCGGC CAGGCGCCGA ATACGGTCTA CCAGACCGCC GTGTTCGAGA AGTACGGTGA CGAAGCCGAC GCGGAAATCG CCCGCATCAT TTCGCAAAAC GCCGGTCCGA ACGGCGGCTC GCAAAAGTCG TCTCAGGCGG ACGGCGCGAA GCCTGTCGCA GCGAAGGTGA TGTAA
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Protein sequence | MSTTQQPAAT TQPTQSAPQP TQPPAQPPAN NGKRKRMMTL LVIVILIAAI AYGLYYFLVA RFHEDTDDAY VNGNVVQITP QVTGTVVAVN ADDTQTVKVG DPLVVLDPAD ARVALEQAEA NLAQTVRQVR GLFADDNQYQ AQVAQRQADL SRAQDDLKRR LTVAQTGAVS QEEISHARDA VKSAQAAVDA AQQQLNSNRA LTANTTIANH PNVQAAAAKV RDAYLNNARN NLPAPVTGYV AKRSVQVGQR VSPGTPLMAI VPLGGVWVDA NFKEVQLKHM RIGQPVELTA DVYGSSVVYH GKVVGFSAGT GSAFSLLPAQ NATGNWIKVV QRLPVRIALD PKELEQHPLR IGLSMQADVS IKDDNGGQLG QAPNTVYQTA VFEKYGDEAD AEIARIISQN AGPNGGSQKS SQADGAKPVA AKVM
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