Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_1448 |
Symbol | |
ID | 6281702 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010681 |
Strand | + |
Start bp | 1623549 |
End bp | 1625504 |
Gene Length | 1956 bp |
Protein Length | 651 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 642621014 |
Product | extracellular solute-binding protein family 5 |
Protein accession | YP_001895087 |
Protein GI | 187923445 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG4166] ABC-type oligopeptide transport system, periplasmic component |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 40 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAGACTTG TGAAGTTTCA CTGGCCGCGC CGCGTGCGGA CTGCAGCGGC AACGCCCGCG GCTGCCGCAG AGCGGCGGCC TGGCACCGTC GCGCGAATCG CGCTGTGCGC AGGGGCGTGT CTCGCATTGA GCGCGGTCTG CGCGCAGGCG CGACCCTCGA TTGCGCAATA CGACGAGCCG AAATATCCCG TCGGCTTCAC GCACTTCGAC TATGCGGATC CCACCGCGCC GAGCGACGGC AAGCTCAGCT TCCAGAATTT CGACGAACTG CAGACTTACG ATTCGCTGAA CCCGTTTCTG GTACGCGGTG CGCCCGCGCC GGACATCCTG CATCTGATGT TCGATACGCT GATGCAGCGG AGCTGGGACG AACTTGCCTC CGAGTACCCG CTGATCGCCG ACGATGTCGA AGTCGCGCCG GACCTCGGTT CGGCCACCTT CCACATCAAT CCTGCCGCGC GCTTTTCAAA CGGCGATCCG ATCACCGCCG CCGACGTCAA ATACTCGTTC GACACATTGA CGAGCCCAAA GGCCTCGCCG CTTTTCAATG CACAGTTCTC GGTCATCAAG AGCGCGACCG TGATCGACAA AAACACGATC CGCTTCGAAT TCAAGCACGC CGAACGCGAC GCACCGCTGA TCGCCGGCGA TTTGCCGATC TTCTCACCGA AGTGGGGCAT GCGCGCGGAC GGCACACGTC TGCCGTTCGA CCAGATCGCG AACGAGCCGC CGGTCGCGAG CGGTCCGTAT CTGATCGAGT CGCGCAAGAA CGACAAGCAG ATCACCTATC GCCGCAACCC CGATTACTGG GCTGCGAATC TGCCGTCGCG GCGTGGCATG TTCCGTTTCG CGAGCATCAC CTTCAAACTG TATCGCGACC ATTACACGCA ACTGGAAGCG TTCAAGGCCG GCGATGCCGA CGCGCTTGTC GAATACAGCG CAACGCAATG GGCGCGCAAA TACGTCGGCA AGAATTTCGA CAACGGACTA TTGAAGAAAG GCGAATTCGC CGACGGCCCC GCGCAGATGC AAGGCATGCT GATGAACCTG CGCAAGCCGA TGTTTCAGGA CCCGCGCGTG CGCCACGCGC TGACGATGGC CTTCGACTAC GACTGGATGA ACCGCATGAT GTTCTACGGT CAATACCGGC GCACCAGCAG CTATTTCGCA GCGAGTCCGT TCGGCGCGAC CGGCATGCCC GGCCCGAAGG AACTGGCCTT GCTTGAACCG TTGAGAGCGA GCGTGCCGCC GGAAGTGTTC GGCCCCATGC TCAAGCAACC CACGACGATC GCCCCGGATT CCTTGCGCGG CAACTTGCGC GTGGCGCGCG ATCTGTTGGC GCAAGCCGGC TGGCACTATC GCGACGGCGC CTTGCGCGAT GCCAACGGCA CGCCGATGAC CATCGAGATC ATGGACGATC AGCCCGGCAT GGACCGCCTG ATCCTGCCGT ATATGCAGGC GCTCGGCATG CTCGGCATTC AGGCGCATAT GCGCGAGATC GACAGTGCGT TGTACCAGAA GCGGCTGGAT AACTTCGAGT ACGACATGAC CACGTTCATC TATCCGCCGG TGACGATTCC GGGTGCGGAA TTGACGCGCC GTTTCGGCAG CGCGGCGGCC TCGGAAGTCG GTTCGGAAAA CTATCCGGGT ATCCGCTCCA AAGCAGTCGA CTCGCTGATT CACTCGGCGC TCTCCGCCGA CAATCTCGAC GATCTGGAAG CGGCGACCCG CGCGCTGGAT CGCGTGCTGA TCTACTCGTT CTACCTCGTG CCCGAGTATT ACGCACCTGG CGCGCGAATC GGCTACAAGT CGACGCTAGG TCATCCGGAC AAAGTGCCCA TGTCGTATCT ATACGAAGAC TGGGTGATCG ACTACTGGTA CACGAAAGGG GACACGAAAA CGGCGGCCGC CCCGACCACA TCTTCCACCG CGGCTAAGGC CGCTACGGCT CACTGA
|
Protein sequence | MRLVKFHWPR RVRTAAATPA AAAERRPGTV ARIALCAGAC LALSAVCAQA RPSIAQYDEP KYPVGFTHFD YADPTAPSDG KLSFQNFDEL QTYDSLNPFL VRGAPAPDIL HLMFDTLMQR SWDELASEYP LIADDVEVAP DLGSATFHIN PAARFSNGDP ITAADVKYSF DTLTSPKASP LFNAQFSVIK SATVIDKNTI RFEFKHAERD APLIAGDLPI FSPKWGMRAD GTRLPFDQIA NEPPVASGPY LIESRKNDKQ ITYRRNPDYW AANLPSRRGM FRFASITFKL YRDHYTQLEA FKAGDADALV EYSATQWARK YVGKNFDNGL LKKGEFADGP AQMQGMLMNL RKPMFQDPRV RHALTMAFDY DWMNRMMFYG QYRRTSSYFA ASPFGATGMP GPKELALLEP LRASVPPEVF GPMLKQPTTI APDSLRGNLR VARDLLAQAG WHYRDGALRD ANGTPMTIEI MDDQPGMDRL ILPYMQALGM LGIQAHMREI DSALYQKRLD NFEYDMTTFI YPPVTIPGAE LTRRFGSAAA SEVGSENYPG IRSKAVDSLI HSALSADNLD DLEAATRALD RVLIYSFYLV PEYYAPGARI GYKSTLGHPD KVPMSYLYED WVIDYWYTKG DTKTAAAPTT SSTAAKAATA H
|
| |