Gene Bphyt_1020 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphyt_1020 
Symbol 
ID6284584 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phytofirmans PsJN 
KingdomBacteria 
Replicon accessionNC_010681 
Strand
Start bp1145961 
End bp1148246 
Gene Length2286 bp 
Protein Length761 aa 
Translation table11 
GC content61% 
IMG OID642620581 
ProductLysine decarboxylase 
Protein accessionYP_001894663 
Protein GI187923021 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1982] Arginine/lysine/ornithine decarboxylases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGTTTC GTTTTCCCGT CGTCATCATC GACGAAGATT TCCGCTCCGA GAACATCTCG 
GGTTCCGGCA TTCGCGCTCT GGCCGAAGCC ATCGAGAAAG AAGGCGCGGA AGTGCTCGGG
TTGACGAGCT ACGGCGATCT GACCTCGTTC GCGCAACAGT CGAGCCGTGC CTCGTGCTTC
ATCCTCTCGA TCGACGACGA CGAGTTGCTG CCCTACGTCG ATAACGTGGT GGTGGAAGGC
GAAACGCCGG AACTCGCGGC CGCGATCGTC GCGCTGCGCG CGTTCGTGAC GGAAGTGCGC
CGCCGCAATG CCGACATTCC GATCTTCCTG TACGGCGAAA CGCGTACGTC GCGCCACTTG
CCGAACGACA TCCTGCGTGA ACTGCACGGC TTCATCCACA TGTTCGAGGA TACGCCGGAG
TTCGTGGCGC GCCATATCAT CCGCGAGACC AAGGTGTATC TGGATTCGCT CGCGCCGCCG
TTCTTCAAGG AACTGGTGCA GTACGCGGAT GAAGGCTCGT ACTCGTGGCA CTGCCCGGGA
CACTCGGGCG GCGTGGCGTT TTTGAAAAGC CCGCTTGGCC AGATGTTCCA TCAGTTTTTC
GGCGAGAACA TGCTGCGCGC GGACGTCTGC AATGCCGTCG ACGAACTCGG CCAATTGCTC
GATCACACGG GTCCGGTGGC GGCTTCGGAA CGCAACGCCG CGCGCATCTT TAGCGCCGAC
CACGTGTTCT TCGTGACCAA CGGCACGTCC ACGTCGAACA AGATCGTCTG GCACGGCACG
GTAGCGCCGG GCGACATCGT GCTGGTGGAC CGCAACTGCC ACAAGTCGAT TCTGCACGCG
ATCACCATGA CCGGCGCGAT TCCGGTGTTC CTCACGCCCA CGCGTAACAA CTTCGGCATC
ATCGGGCCGA TTCCGCGCAG CGAGTTCGAA CCGGAGAACA TCAAGAAGAA GATCCTGGCG
AACCCGTTTG CCCGCGAAGC GCTCGCGAAG AATCCGAACC TCAAGCCGCG CATTCTGACT
ATCACGCAAA GCACGTACGA CGGCGTGATC TACAACGTCG AGATGATCAA GGAGATGCTA
GGCGACTGGC TCGACACGCT GCACTTCGAC GAAGCCTGGC TGCCGCACGC CGAGTTCCAC
GAGTTCTATC AGGACATGCA CGCGATCGGC GCGGGCCGTC CGCGGATCGG CGCGATGGTG
TTCGCCACGC ACTCCACGCA CAAACTGCTG GCCGGCATTT CGCAGGCTTC GCAGATCGTC
GTGCAGGACT CGAAGAACAG CCGCTTCGAC AAGCATCGCT TCAATGAAGC GTATCTGATG
CACACGTCGA CCAGCCCGCA GTACGCGATC ATCGCCTCGT GCGATGTGGC CGCGGCCATG
ATGGAAGCGC CGGGCGGTCC TGCGCTGGTG GAAGAATCGA TCGCCGAAGC GCTCGATTTC
CGCCGCGCCA TGATCAAGGT CGATGCCGAA TACGGCGACG ACTGGTTCTT CAAGGTGTGG
GGCCCGGACC AGTTCGCCGA AGAGGGCATC GGTTCGCGCG AAGACTGGAT GCTGCGCCCG
AACGACGAGT GGCACGGCTT CGGCCCGCTC GCCGACAACT TCAACATGCT CGACCCGATC
AAGGCGACCA TCGTCACGCC GGGTCTGGAT ATGGGCGGCG GCTTCGGCGA GACTGGCATT
CCGGCTGCGA TCGTCACGAA GTATCTGGCG GAACACGGCA TCATCGTTGA GAAGACCGGG
CTGTATTCGT TCTTCATCAT GTTCACGATC GGCATCACGA AGGGCCGCTG GAATTCGATG
GTCACCGAAC TCCAGCAGTT CAAGGACGAC TACGATAACA ACCAGCCGTT GTGGCGCGTG
CTGCCGGAGT TCGTCTCGCA TCATCCGATG TATGAGCGCG TCGGCTTGCG CGATCTGTGC
CAGCAGATTC ATAGCGTCTA CCGCGCGAAC GACATCGCGC GTCTGACCAC CGAGATGTAT
CTGTCGAGCA TGGAACCGGC CATGAAGCCG TCGGATGCGT TCGCCAAGCT CGCGCACCGC
GAGATCGACC GCGTGCCTAT CGACGAGCTC GAAGGCCGTG TCACGTCGAT CCTGCTGACG
CCGTATCCGC CGGGCATTCC GCTGCTGATT CCGGGCGAGC GATTCAACAA GACCATCGTC
AACTATCTGC GTTTCGCGCG CGAATTTAAC GAGCGCTTCC CGGGTTTCCA CACGGATATC
CATGGGCTCG TCGGCGAAAC GATCAATGGG CGCATCGAGT ACTTCGTCGA TTGCGTTCGC
GGCTGA
 
Protein sequence
MKFRFPVVII DEDFRSENIS GSGIRALAEA IEKEGAEVLG LTSYGDLTSF AQQSSRASCF 
ILSIDDDELL PYVDNVVVEG ETPELAAAIV ALRAFVTEVR RRNADIPIFL YGETRTSRHL
PNDILRELHG FIHMFEDTPE FVARHIIRET KVYLDSLAPP FFKELVQYAD EGSYSWHCPG
HSGGVAFLKS PLGQMFHQFF GENMLRADVC NAVDELGQLL DHTGPVAASE RNAARIFSAD
HVFFVTNGTS TSNKIVWHGT VAPGDIVLVD RNCHKSILHA ITMTGAIPVF LTPTRNNFGI
IGPIPRSEFE PENIKKKILA NPFAREALAK NPNLKPRILT ITQSTYDGVI YNVEMIKEML
GDWLDTLHFD EAWLPHAEFH EFYQDMHAIG AGRPRIGAMV FATHSTHKLL AGISQASQIV
VQDSKNSRFD KHRFNEAYLM HTSTSPQYAI IASCDVAAAM MEAPGGPALV EESIAEALDF
RRAMIKVDAE YGDDWFFKVW GPDQFAEEGI GSREDWMLRP NDEWHGFGPL ADNFNMLDPI
KATIVTPGLD MGGGFGETGI PAAIVTKYLA EHGIIVEKTG LYSFFIMFTI GITKGRWNSM
VTELQQFKDD YDNNQPLWRV LPEFVSHHPM YERVGLRDLC QQIHSVYRAN DIARLTTEMY
LSSMEPAMKP SDAFAKLAHR EIDRVPIDEL EGRVTSILLT PYPPGIPLLI PGERFNKTIV
NYLRFAREFN ERFPGFHTDI HGLVGETING RIEYFVDCVR G