Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_0946 |
Symbol | |
ID | 6284166 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010681 |
Strand | + |
Start bp | 1064498 |
End bp | 1066387 |
Gene Length | 1890 bp |
Protein Length | 629 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 642620506 |
Product | type VI secretion protein, VC_A0110 family |
Protein accession | YP_001894589 |
Protein GI | 187922947 |
COG category | [S] Function unknown |
COG ID | [COG3519] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03359] type VI secretion protein, VC_A0110 family |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 48 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATCCGC GACTGCTCGA TTACTACAAC CAGGAACTGA TGTATGTACG CGAACTGGCT GGCGAGTTCG CGCAACTGCA TCCGAAGATC GCGCGGCGGC TCGGCATGCA GGCCGGCGAG ATGACCGATC CGTACGTCGA ACGGCTGATC GAGTCGTTCA GCTTCATGGC GGCGCGTATG CAGCTCAAGC TCGACGCGGA ATTCCCGCGC TTCACGGGAC GTCTGCTAGA GGTGATCTAC CCGAACTATG TGGCACCGAC GCCGTCCATG GCGGTCGCGC GCTTCTATCC GAGCCCGAGC GAAGGCAACC TCGTCGAAGG CTTCCCTGTG CGGCGCGGCA GCATGCTCAC GGGCAAGAAG TCGCCGGGGG AGAACACTTT GTGCGAATTC CGCACGGGCC AGGACGTCGC GCTCTATCCG CTCGAGATTA CCCATGCACA ACTGACGGGG ATTCCGCCGG ACATTCCCAT GCTCGACCGC TATGTGCCGC CCCACACGCA AGTGCGTGGC GCATTGCGGC TGCGATTGCG TTCCACGGGC GATGCCAAAA TCGCCGAGCT GCGCGGACTC GACCGACTGC CGGTCTATCT CGCCGGAGAT GAGCAGGTTG CGTCGCATCT GTTCGAACTG CTTCACGCGG CAGGCGTTGC GTCGATCACG GGCGAGCCTG GGCGTTTCGG CGACGCGGCG CGCCCCTTCT GTGCGGTCAC GCATGGCGCG GTCGCACACG AGGGGCTTGG CGTCGATCAG GGTTTGCTGC CGCTCACCTG GTCGAAATTC CATGGGCACA ATCTTCTACA CGAATATTTC GCATGTCCGA GCCGCTTTTA TTTTTTCACG CTGACCGGAC TGCGCGAAGG GCTCAGCAAG GCGAAAGGCC ATGAAGTCGA GATCGTGGTG CTGCTCGATC AGTCACCGGA CCGGCTGATC GGCCTTGTCG ACGCCTCGCG TTTCGCGCTG TTTTGCACAC CCGTGATCAA TCTGTTTCCG CGCAAAGCGC AGCGCATCGA ATTGAATCAG GCCAGCACGG AATTCCATCT GGTTCCGAAG CGCAGCGCGC CGCTCGACTA CGAAGTCTAT TCGGTCGAAG CACTCACGGC GCAGGTCGGC AAGAACTCGA CGGAATTCGC CTTCCGGCCG TTGTATCAAA CGCTGAACAA CGACGAAGGC AACCACGGGC GCTATTTTTC GCTTCGCCGC GAACGCCGGT TGTTATCTGA CTCGGCCCGC CGCTACGGTA CGCGCACGCC GTACATTGGA ACTGAAGTGT TCGTGTCGCT GGTCGACCAG CAGGAAGCGC CGTATCACGA GGGAATGCGC TATCTGTCGA TCGACGCCTG GCTGACCAAT CGCGACTTGC CGAATCTGTT GCCGCGCAAC GGCGTGGACG ATCTGGACGC CGTTGACTCG GTGCCTGCGA TCAGCGTCGG CTTGATTCGT GCGCCAAGCG CGCCTCGCGC GCCGTTTGCC GAGCGCGAAA CAGCTTGGCG GCTTATCCGG CAACTGAACT TCAACTATTT GCCGCTGGAA GATATGGATC ACCGCCCTGG CGGCCAGGGT GTGCGCGACA TGCTGCGCCT GTTCCTGACC GGCGACGACG TGGGACCGCG GCGTCAGGTG GAAAGCCTCG TCGGCGTGAA GACGCGGCCG GTCGCGAGGA AGCTGCCCGG TGGCGGCCCG CTGGTGTTCG GTCGCGGCAT CGAATGTCAG TTGACGGTCG ATGAAACCGG CTTTTCCGGT TTGAGCCCCT ACCTGTTCGG GGTGATTCTC GAGCACTATC TGGCACGGCA CGTATCTATC AATTCGTTCA CGCAGACCGA GCTTCATTCA ATGCAGCGCG GCCAGTTGAT GCGCTGGCCC GTGCGCATGG GCACACGTGG AGTGGCTTGA
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Protein sequence | MDPRLLDYYN QELMYVRELA GEFAQLHPKI ARRLGMQAGE MTDPYVERLI ESFSFMAARM QLKLDAEFPR FTGRLLEVIY PNYVAPTPSM AVARFYPSPS EGNLVEGFPV RRGSMLTGKK SPGENTLCEF RTGQDVALYP LEITHAQLTG IPPDIPMLDR YVPPHTQVRG ALRLRLRSTG DAKIAELRGL DRLPVYLAGD EQVASHLFEL LHAAGVASIT GEPGRFGDAA RPFCAVTHGA VAHEGLGVDQ GLLPLTWSKF HGHNLLHEYF ACPSRFYFFT LTGLREGLSK AKGHEVEIVV LLDQSPDRLI GLVDASRFAL FCTPVINLFP RKAQRIELNQ ASTEFHLVPK RSAPLDYEVY SVEALTAQVG KNSTEFAFRP LYQTLNNDEG NHGRYFSLRR ERRLLSDSAR RYGTRTPYIG TEVFVSLVDQ QEAPYHEGMR YLSIDAWLTN RDLPNLLPRN GVDDLDAVDS VPAISVGLIR APSAPRAPFA ERETAWRLIR QLNFNYLPLE DMDHRPGGQG VRDMLRLFLT GDDVGPRRQV ESLVGVKTRP VARKLPGGGP LVFGRGIECQ LTVDETGFSG LSPYLFGVIL EHYLARHVSI NSFTQTELHS MQRGQLMRWP VRMGTRGVA
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