| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_0645 |
|---|
| Symbol | |
|---|
| ID | 6282119 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010681 |
|---|
| Strand | - |
|---|
| Start bp | 702957 |
|---|
| End bp | 704480 |
|---|
| Gene Length | 1524 bp |
|---|
| Protein Length | 507 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 642620210 |
|---|
| Product | threonine dehydratase |
|---|
| Protein accession | YP_001894294 |
|---|
| Protein GI | 187922652 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1171] Threonine dehydratase |
|---|
| TIGRFAM ID | [TIGR01124] threonine ammonia-lyase, biosynthetic, long form |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.701109 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.544724 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCTCCC ACGACTACCT GAAAAAAACC CTGACCGCGC GCGTCTACGA CGTGGCCCGC
GAGACCGAAC TCGAACGCGC GCCGAATCTG TCGGCACGTC TGCGCAATCC GGTCTATCTG
AAGCGCGAGG ACAACCAGCC GGTGTTCTCG TTCAAGGTGC GCGGCGCGTA CAACAAAATG
GCGCATATTT CCGCTGAAGC GTTGGAACGT GGGGTGATTA CGGCGTCGGC GGGCAATCAT
GCGCAGGGCG TGGCGCTGTC GGCGGCGCGT ATGGGCGTGA AAGCGATCAT CGTGGTGCCG
GTTACGACGC CGCAGGTGAA GGTCGACGCG GTGCGCGCGC ACGGCGGCCC GACCGTCGAA
GTGGTGCAGT TCGGCGAATC GTATAGCGAC GCGTATGAGC ACGCAGTAAA GCTGCAAAAA
GAGCGCGATC TGACCTTCGT GCATCCGTTC GACGATCCGT ATGTGATCGC CGGCCAGGGC
ACCGTGGCGA TGGAAATTCT CAGCCAGCAT CAGGGGCCGA TTCACGCGAT CTTCGTGCCG
ATCGGCGGCG GTGGACTGGC GGCGGGTGTG GCTGCATACG TGAAATCGGT GCGGCCCGAG
ATCAAGGTGA TCGGCGTGCA GACCGATGAT TCGTGTGCAA TGGCAGCATC GCTGAAAGCC
GGTGAGCGGG TCACGCTGAA TGAGGTCGGT CTGTTCTCGG ACGGCACGGC GGTGAAACTC
GTCGGTGAAG AAACCTTCCG CCTGTGCAGC GAATATCTCG ACGACGTGCT GCTCGTGAAT
ACCGACGCGC TCTGCGCCGC GATCAAGGAC GTCTTCCAGG ACACCCGCAG TGTGCTGGAG
CCCGCGGGCT CGCTGGCCGT GGCCGGCGCC AAGCAGTATG CGGAGCGCGA AGGCATCGAG
AACCAGACGC TGATCGCGAT CACGTCGGGC GCGAACATGA ATTTCGACCG CATGCGCTTC
GTGGCCGAGC GCGCCGAAGT CGGCGAAGCG CGCGAAGCGG TGTTCGCCGT GACGATCCCC
GAAGAGCGCG GCAGTTTCCG CCGCTTCTGC GAACTGGTCG GCACACGCAG CGTCACCGAA
TTCAACTATC GTATTGCGGA TGCGAACTCC GCCCATATCT TCGTGGGCGT GCAGATCAGG
AATCGCAGCG AGTCGGCGCA GATCGCGGGC GCGTTTGAAG CGCACGGCTT CGCCACCGTC
GATCTGACGT TCGACGAACT CTCCAAGCAG CACATCCGCT ACATGGTCGG CGGGCGCTCG
CCCTTGGCAC ACGACGAACG TCTGTTCCGC TTCGAGTTTC CCGAACGGCC AGGCGCGCTG
ATGAAATTCC TTTCGTCGAT GGCGCCGAAC TGGAACATCA GCCTGTTCCA CTATCGCAAC
CAGGGCGCGG ACTATAGCTC GATTCTGGTC GGCATCCAGG TGCCGGATAG CGAGAACGAG
GCGTTCAACA AGTTTCTCGC CACGCTCGGC TATCCGAACT GGGAAGAGAC GCAGAACCCG
GTGTATCGAC TGTTCCTCGC TTGA
|
|---|
| Protein sequence | MASHDYLKKT LTARVYDVAR ETELERAPNL SARLRNPVYL KREDNQPVFS FKVRGAYNKM
AHISAEALER GVITASAGNH AQGVALSAAR MGVKAIIVVP VTTPQVKVDA VRAHGGPTVE
VVQFGESYSD AYEHAVKLQK ERDLTFVHPF DDPYVIAGQG TVAMEILSQH QGPIHAIFVP
IGGGGLAAGV AAYVKSVRPE IKVIGVQTDD SCAMAASLKA GERVTLNEVG LFSDGTAVKL
VGEETFRLCS EYLDDVLLVN TDALCAAIKD VFQDTRSVLE PAGSLAVAGA KQYAEREGIE
NQTLIAITSG ANMNFDRMRF VAERAEVGEA REAVFAVTIP EERGSFRRFC ELVGTRSVTE
FNYRIADANS AHIFVGVQIR NRSESAQIAG AFEAHGFATV DLTFDELSKQ HIRYMVGGRS
PLAHDERLFR FEFPERPGAL MKFLSSMAPN WNISLFHYRN QGADYSSILV GIQVPDSENE
AFNKFLATLG YPNWEETQNP VYRLFLA
|
|---|
| |