| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_0052 |
|---|
| Symbol | |
|---|
| ID | 6284004 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010681 |
|---|
| Strand | + |
|---|
| Start bp | 65601 |
|---|
| End bp | 66764 |
|---|
| Gene Length | 1164 bp |
|---|
| Protein Length | 387 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 642619637 |
|---|
| Product | Extracellular ligand-binding receptor |
|---|
| Protein accession | YP_001893726 |
|---|
| Protein GI | 187922084 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 54 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCATGACG TAAAGAAAAC AGTCGGTTTC GTCGCCGGCA TGGCGCTGTG CCTGAGCGTG
CCCGTCGCAT ACGCAGCCAA CGACATCGTG GTCGGCGTAG CAGTGGGGCT GAGTGGTGCG
AACAGCGTGG TTGCGCCTTC GGTGGTGCAG GCGGCCGATC TGGCCGTGGA TCAGATCAAT
GCCGCCGGCG GCGTGCTCGG TCGCAAGCTG CGGCTCGAGA TCGTGGATGA CAGCTCGAGC
GCCGCCGGCG CGCAGAAAGC CTATGACGTG CTGGTATTCC AGAAAAAGGT CGACGCGATC
GTCAGCATGG AGACCAGCGC GGCCCGCAAC GCGGCGCTGC CCATCGTCAC GCGCGGCAGG
ATACCGTTTA TCTACACCTC GTTCTACGAG GGACGCTCGT GCAACAAGTA CATGTATATC
AATGCATGGG TGCCCGAGCA GCAGGTTGCG CCGATGGTCG ATTACTTCAC CAGGCAAAAG
GATGCCAAGA CCTTCTTTCT GATCGGCAGC GACTATGCTT TCGGGCGCGG CATGCTGGCG
TTCACGCGCA AGTACATCGA GAAAACCGGC GGCAAGGTCG TCGGTGAGGA ATACAACCCG
ATCGACGCGA CCGACTGGAC CGCCATCGTC AGCAAGATTC GCGCGGTCCA CCCCGACGCG
TTGATGATCT CGACGGCTGG CGGCGTGCCG AACGTCACCC TGACCAAGCA GTTGCGCACC
GGCGGCATCA AGGCTCTGTA CGGCAATCTC AGCATCGACG AGGGCACGGC CAGGAGCATG
GGCGCGGATG CGGTCGGAAC CTATGTGGCC GGCTCGTATT ACACCAGCCT GCAGACACCC
GCCAATCAGA AATTCATGGC CGCAATGAAG GCCAGGTTCG GCGACAAGCT GGAAACGCCG
AACGACCTCT CGGTGCCGGA ATACGATGCG GTGCTCGCAT ACGCCGAGGC CGTCGCCAAG
GCCGGTTCGA CCGCGACCGA CAAGGTGATT CCGGCGCTCG CGTCGGTCAC GGTGGATGGG
CCGCGCGGCG CCATCACCAT GGACAAGGAG CGTCACGCGG CACTTTCCAT GTACCTGGGG
CAGGTAATGC CCGACGGCAG TGTCAAGGTC ATCTCCGAGT TCAAGAACGA GGATCCGGGC
GAGCAGTGCC CGAACCTCAA ATGA
|
|---|
| Protein sequence | MHDVKKTVGF VAGMALCLSV PVAYAANDIV VGVAVGLSGA NSVVAPSVVQ AADLAVDQIN
AAGGVLGRKL RLEIVDDSSS AAGAQKAYDV LVFQKKVDAI VSMETSAARN AALPIVTRGR
IPFIYTSFYE GRSCNKYMYI NAWVPEQQVA PMVDYFTRQK DAKTFFLIGS DYAFGRGMLA
FTRKYIEKTG GKVVGEEYNP IDATDWTAIV SKIRAVHPDA LMISTAGGVP NVTLTKQLRT
GGIKALYGNL SIDEGTARSM GADAVGTYVA GSYYTSLQTP ANQKFMAAMK ARFGDKLETP
NDLSVPEYDA VLAYAEAVAK AGSTATDKVI PALASVTVDG PRGAITMDKE RHAALSMYLG
QVMPDGSVKV ISEFKNEDPG EQCPNLK
|
|---|
| |