| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_0003 |
|---|
| Symbol | gyrB |
|---|
| ID | 6283581 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010681 |
|---|
| Strand | + |
|---|
| Start bp | 3375 |
|---|
| End bp | 5846 |
|---|
| Gene Length | 2472 bp |
|---|
| Protein Length | 823 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 642619591 |
|---|
| Product | DNA gyrase subunit B |
|---|
| Protein accession | YP_001893680 |
|---|
| Protein GI | 187922038 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit |
|---|
| TIGRFAM ID | [TIGR01059] DNA gyrase, B subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0806649 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 48 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTGAAA CGAACAATTC GCAACCCGAC AACAGCTACG GCGCATCCTC GATTCAGATC
CTCGAAGGTC TGGAGGCGGT GCGCAAGCGG CCCGGGATGT ACATCGGGGA TACATCGGAC
GGGACCGGTC TGCATCACCT CGTATTCGAA GTGCTGGACA ACTCCATCGA CGAAGCGTTG
GCGGGGCATT GCAACGACAT CCAGGTGATC ATTCACGCGG ACAACTCCAT TTCCATCACC
GACAACGGCC GCGGCGTGCC GACCGGTCTG AAGATGGACG ACAAGCACGA TCCGAAGCGC
AGCGCCGCTG AAATCGTGAT GACCGAGCTG CACGCCGGCG GCAAGTTCGA CCAGAACAGC
TACAAGGTGT CCGGCGGCCT GCACGGCGTG GGCGTGTCGT GCGTGAACGC GCTGTCGGCG
TGGCTGCGTT TGACCATTCG CCGCGACGGC AAGAAGCACT TCATGGAATT CCACCGTGGC
GTGCCGCAGA ACCGCATTAT CGAAGAGATC GACGGCGTGG CTGTTTCGCC GATCCAAGTC
ACCGGCGAGA CCGAGAACCG CGGTACCGAA GTGCACTTCC TCGCCGACGA GACGATTTTC
GGCAACATCG AATATCACTA CGACATTCTG GCCAAGCGGA TTCGCGAACT GTCGTTCCTG
AATAACGGCG TGCGAATCAA GCTGACCGAC CAGCGCACCG GCAAGGAAGA AGATTTCGCG
TTCGTGGGCG GCGTGAAGGG CTTTGTCGAG TACATCAATA AGAACAAGTC CGTGCTGCAC
CCGAACATTT TCCACATCAG CGGCGAGAAA GACGGCGTGG GCGTGGAAGT GGCGATGCAG
TGGAACGACA GCTACAACGA AAACGTGCTG TGCTTCACGA ACAACATTCC GCAGCGTGAT
GGCGGGACGC ACTTGACCGG GTTGCGTGCC GCGATGACGC GCGTGTTGAA CAAGTACATC
AACGATCACG AAGTCGCGAA GAAGGCGAAG GTTGAGACTT CTGGCGACGA TATGCGTGAA
GGGTTGTCGT GCGTGCTGTC GGTGAAGGTG CCGGAGCCGA AGTTCAGCGC GCAGACGAAG
GACAAGCTGG TGTCGTCGGA AGTGCGCGCG CCGGTGGAAG ACGTGGTCGC GAAGGCGCTC
GAAGAGTTTC TGCTTGAGAC GCCGAATGAC GCGAAGATTA TTTGCAGCAA GATTGTCGAT
GCGGCGCGCG CGCGGGATGC GGCTCGGAAG GCGCGTGAGA TGACGCGTCG CAAGGGTGTG
CTCGACGGCG TGGGTCTGCC TGGGAAGCTG GCAGATTGCC AGGAGAAAGA CCCGGCGAAG
TCCGAGATTT ATATCGTCGA GGGTGACTCG GCAGGCGGGT CGGCGAAGCA GGGCCGGGAT
CGGAAGTTTC AGGCGATTTT GCCGCTGCGC GGCAAGGTGC TGAATGTGGA GAAGGCGCGG
TATGACAAGC TGCTTTCTTC GGAGCAGATT GTGACGCTGA TTACGGCGCT CGGCTGCGGG
ATTGGTAAGG AAGACTACAA CCTCGATAAG CTGCGTTATC ACCGCATCAT CATCATGACC
GATGCTGACG TTGACGGTGC GCACATTCGG ACGCTGTTGT TGACGTTCTT CTATCGGCAA
ATGCCGGAGA TGATCGAGCG TGGGTATATC TATATCGCGC AGCCGCCGCT GTTTAAGATC
AAGGCCGGGA AGGATGAGCG GTATTTGAAG GATGAGGCTG AGGTTAATGC TCACATTCTG
AAGCTGGCGC TGCAGGGGTC GGAGTTGTCG GCTTCTGAAG GTTCGACTCC GATTACAGGC
GATGCTTTGG GTGAGTTGGC CCGGGCTTAT TTGCTGGCTC AGGCGGTTGT TAATCGGTTG
AGCCGGTTGT ATGACGCTGG GGCGCTCGAG GCCATCATGG ATGGGATTGC GATCGACCTG
TCCAGCGAGG AAGCGGCTGA TGCGTCCGCC AAGGCTCTGG AAGCGAAGCT AAGGGATGAT
CCGTTGAAGC CTGAAGTTAA GGTTACGACG ATGTATGACC CTGTGCGTGA ACTGCGCTCG
CTGCGGGTTG CGAGGACGCA TCATGGGAAT CAGAAGATTT CTGTGTTGGA TCAGGATTTT
CAGCTCACTG CTGACTATCA ACAGCTGATC AATACCGCTA ATACGTTTAA GGGGTTGATT
GGGACTGGCG CTGTCATTAA ACGTGGCGAG CGGAGTATGG CTGTTACTGA CTTTAAGTCG
GCGATGAAGT GGTTGCTGGC TGATGCTGAA CGCAACATCT CGAAGCAGCG CTATAAGGGT
CTCGGTGAGA TGAACCCTGG GCAGCTTTGG GAGACAACGA TGGATCCGAC TGTGCGTCGT
TTGCTGAGGG TGCAGATTGA GGATGCTATT GCGGCTGATG GCATTTTCAC TACGCTCATG
GGGGATGATG TGGAGCCGCG TAGGGCTTTC ATTGAGTCGA ATGCGTTGCG GGCGGGGAAT
ATTGATGTTT GA
|
|---|
| Protein sequence | MTETNNSQPD NSYGASSIQI LEGLEAVRKR PGMYIGDTSD GTGLHHLVFE VLDNSIDEAL
AGHCNDIQVI IHADNSISIT DNGRGVPTGL KMDDKHDPKR SAAEIVMTEL HAGGKFDQNS
YKVSGGLHGV GVSCVNALSA WLRLTIRRDG KKHFMEFHRG VPQNRIIEEI DGVAVSPIQV
TGETENRGTE VHFLADETIF GNIEYHYDIL AKRIRELSFL NNGVRIKLTD QRTGKEEDFA
FVGGVKGFVE YINKNKSVLH PNIFHISGEK DGVGVEVAMQ WNDSYNENVL CFTNNIPQRD
GGTHLTGLRA AMTRVLNKYI NDHEVAKKAK VETSGDDMRE GLSCVLSVKV PEPKFSAQTK
DKLVSSEVRA PVEDVVAKAL EEFLLETPND AKIICSKIVD AARARDAARK AREMTRRKGV
LDGVGLPGKL ADCQEKDPAK SEIYIVEGDS AGGSAKQGRD RKFQAILPLR GKVLNVEKAR
YDKLLSSEQI VTLITALGCG IGKEDYNLDK LRYHRIIIMT DADVDGAHIR TLLLTFFYRQ
MPEMIERGYI YIAQPPLFKI KAGKDERYLK DEAEVNAHIL KLALQGSELS ASEGSTPITG
DALGELARAY LLAQAVVNRL SRLYDAGALE AIMDGIAIDL SSEEAADASA KALEAKLRDD
PLKPEVKVTT MYDPVRELRS LRVARTHHGN QKISVLDQDF QLTADYQQLI NTANTFKGLI
GTGAVIKRGE RSMAVTDFKS AMKWLLADAE RNISKQRYKG LGEMNPGQLW ETTMDPTVRR
LLRVQIEDAI AADGIFTTLM GDDVEPRRAF IESNALRAGN IDV
|
|---|
| |