Gene Bphy_7217 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphy_7217 
Symbol 
ID6248726 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phymatum STM815 
KingdomBacteria 
Replicon accessionNC_010625 
Strand
Start bp1875112 
End bp1878054 
Gene Length2943 bp 
Protein Length980 aa 
Translation table11 
GC content62% 
IMG OID642598861 
Productdiguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 
Protein accessionYP_001863263 
Protein GI186471945 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.249898 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones36 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCTCGA TCATCGCATC ACTGCAACGC GCTTTTGAAT ACCTGTCGCA GGATCTGCTG 
CGACGCGTAG AGATACGCTA CCGGCTGATG ACCGCGTTCA TCCTGCTGTC ATTGCTGCCC
GTTCTCATTT CCGGCTACAT ATCGTACGCG GAGTCGACGG CGGCCATCAA AGAAAAAGCC
GAGATCTTTT CGAAGGAAGT GGTCAAGCAG GTGTCGCGAA ACGTCGTGCT GCGCATGGAG
CAGGTCGAGA CGGAGAGCAG CCTGCTCGTG CTGTCCGATC AGGTTCAGGC AGCGCTGATG
AAAGTCGAAA GCGGCAGCCC GAAGGAACAG AACGAAGCGC GTCAGGACAT GACGCGGCTG
CTTCTGGACC ACTACGGCTC AGTCGATTTC ATCAACGAAA AGTATCTGCT CGACCAGCAC
GACCGGGTCA TGGACACGCA GGCGTTCGCG CAACTGACAC GCGGCGTGAT GCGGTTCGTC
AGGCAGGCGC TCCAGCACAA CGGACGCCCG TACTGGGGCA GCTACGACAA CGGCGTGGGC
CAGCAGAACC TGGGGATGGT GCGCGCGGTT ATCGGCAAGA GCAACAACCG GCAGCTTGGC
CATCTGGTTC TGGTGATCCG TCCCGAACAC TTCTCGACGA TTTTCAACGA CGTTGCATTG
GGCACGGGCA CGCAGATCTA TGTGCTCGAC ACGAGCAACA ACAAGCTGAT CGTGCGCGCC
GACGACACGC CCGCCGGCGC CGACGCGGCG GCCGAGCCCG GCCTGATCGA CAAGATTACG
CACAACAACG AGACGCTCGG CGAGCCGAAT GGCTTCGTCA GCTTCGAAGG CAAGAACCGC
GCGGGCTACT TCGCGGCGTA TACACGGATT CCCGGCACGA CATGGTTCGT CGTCAGCACG
ATACCCGAGA AGAAGCTGAC GGCCGAGGCG CAATCCGTGC GCAACCAGAT GGTGCTGGTC
GGCATTTCGG GCTTCCTGCT TTCCATCTTC TTTGCCTACT TCATCTCGCA CAGCATTTCG
GCGCCGCTGA AGAACCTCGT GCGCAAGATG CACGACACGG GCAGCGATGC GGGCGCCGAA
TCCGAAGACC TCGCGCAAGC GCCTGTCGGC AGCGACGGCC AGGACGAGCT GGGCAGGCTC
GAACAGCGCT TCGAAAGAAT GCGCGCGGCA ATCAGGCAGA AAATCCAGAA GATCAACGAG
ATCAACGCAT CGCTCGAACA GACGGTGGCC GAGCGCACTG CGGAACTCGT CAGCCGTGAG
CTGGAGTCGC GGACGCTGAT CGAAAATTCG CCGGACACGA TCACGCGCTA CGACCGCGAC
CTGCGCCGCA CGTATGCGAA CCCCGCGTTT TGTTCGTCGG CGGGACGCAG TCTTGGCGAA
GCGCTCGGCA AGCGGCCGTC GGAGATACCC GGCGGAGCGA ACGCGCTGAT CTACGAGCGC
AAGATCGGCG AAGTGATTGC GAGCGGCAAG AGCGGGCAGT TCGAATTGCG CTGGCTCAGC
AAGGACGGAC AGGAGCAGTG CTCGCATATT CGCCTCACGC CTGAGATCGA TCCGTCGGGC
AAGGTGAACT CCGTGCTCGC GGTCGGCCGC GACCTGTCGG ACCGGATGGC GTTCGAAGCG
GCAATCTGGC AACAGGCCAA CTTCGATACG CTGACACAAC TGCCGAACCG CCAGATGTTC
CAGAATCGTC TCGAACAGGA AGCGAAAGTC GCGCAGCGTT CCGGCCACCG GATGGCCCTG
ATGCTGATCG ATCTGGATCG CTTCAAGGAA GTCAACGACT CGTTGGGACA CGATACGGGC
GACACGCTGC TGATCGAAGC TGCGCGGCGC ATCACCTCGT GCGTGCGTGA ATCGGATACC
GTGGCGCGTC TGGGCGGCGA CGAGTTCACC GTGATCCTGC CGGACATCGA CAACTGCGGC
AGTATCGAAC GGATTGCACG AACGATCATC GAGACCCTGT CCGAGCCGTT CGCGCTCGGC
CCGGACGAAG CGTTCATTTC GGCGAGCATC GGCGTCACGG TATATCCGGA CGATGCACGC
GAACTCGACG TGCTCTTCAA GAACGCCGAC CAGGCGATGT ACGCGGCCAA GAACGCCGGA
CGCAATCGCC TGAACTACTT CACGCCGGAC CTTCAGGTCG CAGCGGAAAA GCGCCTGCGC
CTGACAAGCG ATCTGCGCAC CGCTTTGCCG CACGATCAAT TCCGGCTCTA CTACCAGCCG
ATCGTCGATC TGTCGACGGG CGACATTTTC AAGGCCGAGG CGCTGATCCG CTGGCTGCAT
CCCGAGCGCG GCATGGTCAG CCCGCTGGAC TTCATCCCCC TCGCGGAAGA CACGGGCCTG
ATCGTGCCGA TCGGCGAGTG GGTGTTCCGC CAGGCCGTGC AGCAGGCGAA GCTGTGGCGC
CAACGCTTCC ATCCGTCGTT CCAGATCAGC GTGAACATGT CGCCCGTGCA GATTCGCCAG
GACAATCAGC TCGGCGCGCT ATGGTCCGAC TACCTGACCC GCGAAGGCAT GCCGGGACAG
AGCATCGCGA TCGAAATCAC GGAAGGCCTG TTGCTGCACG CCGATCTGAA TATCGACGCG
CGGCTCGCGA CGTTCCGGCA CGCGGGCATC CGCATTTCCA TCGACGACTT CGGCACGGGC
TACTCGTCGC TGGCTTACCT GAAACGCTTT GACATCGACT TCCTGAAGAT CGACCGGTCT
TTCGTGCAGA ACCTGGGCTT CGACGCGGAC AATCAGGCGC TATGCGAGGC GATGGTCGTG
CTCGCGCACA AGCTCGGACT GAAGGTAATC GCGGAAGGCG TCGAGACCGT CGAGCAGCGC
GACTTTCTGA CGGCTGTCGG CTGCGACTTC GCGCAGGGCT TCCTGTATTC GCAGCCCGTC
CCGCCTGACC AGTTCGAGAC GCTCGTCTGG CCGCGTATCG AGGTCAGCCC GGAAAGCATC
TGA
 
Protein sequence
MSSIIASLQR AFEYLSQDLL RRVEIRYRLM TAFILLSLLP VLISGYISYA ESTAAIKEKA 
EIFSKEVVKQ VSRNVVLRME QVETESSLLV LSDQVQAALM KVESGSPKEQ NEARQDMTRL
LLDHYGSVDF INEKYLLDQH DRVMDTQAFA QLTRGVMRFV RQALQHNGRP YWGSYDNGVG
QQNLGMVRAV IGKSNNRQLG HLVLVIRPEH FSTIFNDVAL GTGTQIYVLD TSNNKLIVRA
DDTPAGADAA AEPGLIDKIT HNNETLGEPN GFVSFEGKNR AGYFAAYTRI PGTTWFVVST
IPEKKLTAEA QSVRNQMVLV GISGFLLSIF FAYFISHSIS APLKNLVRKM HDTGSDAGAE
SEDLAQAPVG SDGQDELGRL EQRFERMRAA IRQKIQKINE INASLEQTVA ERTAELVSRE
LESRTLIENS PDTITRYDRD LRRTYANPAF CSSAGRSLGE ALGKRPSEIP GGANALIYER
KIGEVIASGK SGQFELRWLS KDGQEQCSHI RLTPEIDPSG KVNSVLAVGR DLSDRMAFEA
AIWQQANFDT LTQLPNRQMF QNRLEQEAKV AQRSGHRMAL MLIDLDRFKE VNDSLGHDTG
DTLLIEAARR ITSCVRESDT VARLGGDEFT VILPDIDNCG SIERIARTII ETLSEPFALG
PDEAFISASI GVTVYPDDAR ELDVLFKNAD QAMYAAKNAG RNRLNYFTPD LQVAAEKRLR
LTSDLRTALP HDQFRLYYQP IVDLSTGDIF KAEALIRWLH PERGMVSPLD FIPLAEDTGL
IVPIGEWVFR QAVQQAKLWR QRFHPSFQIS VNMSPVQIRQ DNQLGALWSD YLTREGMPGQ
SIAIEITEGL LLHADLNIDA RLATFRHAGI RISIDDFGTG YSSLAYLKRF DIDFLKIDRS
FVQNLGFDAD NQALCEAMVV LAHKLGLKVI AEGVETVEQR DFLTAVGCDF AQGFLYSQPV
PPDQFETLVW PRIEVSPESI