| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphy_6992 |
|---|
| Symbol | |
|---|
| ID | 6248507 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phymatum STM815 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010625 |
|---|
| Strand | + |
|---|
| Start bp | 1643205 |
|---|
| End bp | 1644236 |
|---|
| Gene Length | 1032 bp |
|---|
| Protein Length | 343 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642598642 |
|---|
| Product | TRAP dicarboxylate transporter- DctP subunit |
|---|
| Protein accession | YP_001863044 |
|---|
| Protein GI | 186471726 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
|---|
| TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family
[TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.170519 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 46 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCATTCCA CTTCCCGGCG ACGGTTCCTT CAAACGGCCT CTGTGGCCTC CCTCGCGGCG
GCGGGCGCGG GCTTTCCCGC GATCGTGCGC GCCCAGCCGG CGGCCACGTT GCGGCTGTCA
TCATCGATGC CCGCGAACGA AAACGCCGCG CATTACGTGT GGTATCAGAA GCTCGCTGCG
AATCTGAAGG CGAGCGTCGG CGACCAGATT CGGATTGACT ATTTCCCGAA CAGTCAGCTC
GGCAAGGAGA GCGACGTCGT GCAGCAGGTG AAGGTCGGTG CGGTCGACAT GATGGTCACC
GGCTCGTCGA TCTGGGCGAC CGTGCTGCCG GAGCTCGGCA TGCTCGATCT GGGCTATGTG
TTCGACAACT TCGACCATGT CGGGCGCGCC ATGGACGGCA CAGTCGGCAA ATCCTTTGAC
ACCATGCTGC AACAGCGTGC GGGCTGCTCG GTCGTCACGT GGGGCTATTC CTTCGGCGCG
CGCAACGTGT TCACGAAGAA GCCGACGCAG TCGCTCGCCG ATATCAAGGG CGTAAAGCTG
CGCGTGCTGC CCACGCCCGC CTTCATGGAA ACCTTCAGGC TGATGGGCGC CGTACCGACG
CCCATTCCCA TCGGCGAGTT GTACATGGCC GCGCAGACAG GTGTCGTCGA TGGCTTCGAG
CACGACTGCG CGACCGTGCT CGCGAGCAAG TACGACGAAG TCGTGAAGTC GTGCTGGCAA
ACTCAGCACG TCTTCAGCCC GCTCGTCGTC GTCATGGGCC GCCGCGCCCT GGCGAAGATT
CCAGAGAATC TACGTCCCGC ATTTCAGAAA GCGGCGCAAG ACGCGACCGC GAGTCAGCGC
GTCGCAGCCA TCCAGACGGC TGCCAGCGCC GAGCAGGAGC TGAAGAAGCG CGGCATGACG
TTTTATCCGA TGTCGAAAGC CGACCGCGAC ACCGCGCGCG GCGAGATGCA GTCGCAGTTG
TACGCGAACT TCTCGAAGCA GTATCCCGCG ACCGCGCCGC TCTTCACCGC CATCGCCGCA
GTGCGCGGCT AA
|
|---|
| Protein sequence | MHSTSRRRFL QTASVASLAA AGAGFPAIVR AQPAATLRLS SSMPANENAA HYVWYQKLAA
NLKASVGDQI RIDYFPNSQL GKESDVVQQV KVGAVDMMVT GSSIWATVLP ELGMLDLGYV
FDNFDHVGRA MDGTVGKSFD TMLQQRAGCS VVTWGYSFGA RNVFTKKPTQ SLADIKGVKL
RVLPTPAFME TFRLMGAVPT PIPIGELYMA AQTGVVDGFE HDCATVLASK YDEVVKSCWQ
TQHVFSPLVV VMGRRALAKI PENLRPAFQK AAQDATASQR VAAIQTAASA EQELKKRGMT
FYPMSKADRD TARGEMQSQL YANFSKQYPA TAPLFTAIAA VRG
|
|---|
| |