Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphy_6108 |
Symbol | |
ID | 6247673 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phymatum STM815 |
Kingdom | Bacteria |
Replicon accession | NC_010625 |
Strand | - |
Start bp | 655657 |
End bp | 659703 |
Gene Length | 4047 bp |
Protein Length | 1348 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 642597809 |
Product | type VI secretion protein IcmF |
Protein accession | YP_001862211 |
Protein GI | 186470893 |
COG category | [S] Function unknown |
COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 0.916616 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAAAT TCCTGTCGTT TCTGGTCTCG CGCCAGTTCC TCGCCTTTCT CGCGCTGATT GTTGTCGCGC TGGTGATCTG GTATGTCGGA CCCTTTGTCG CATTCGGCGG CCTGAAGCCG CTCGCAGGCG CAGGCATGCG TGTGCTCGTC ATCGCCCTGC TGCTCGCGGG CGTTCTGCTC TGGCTGGTCC GCTGGTCGAC CAGCCCCGTC ATCGTGGCGT TGCTGTGCCT GCTGATCTGG TACGCGACGC CGCTGCTCAC GTTTGGCAAG GCCCAGCCCT TCGCGCCGGA GTCGGCACGC ATCATCGCCA TCGCGGTCGC GCTGTTCATT TTCGCCGTGT ACTGGCTCTT CCGCCTCTGG CAGGAGATGA AGAGCAACCG CTCGCTGGTC GACCGGATGC TGACGTTCGG TGGCAAGAAG GAACCGTCGC CTGCCGCAGT ACAGCTGAAA GAGGTCGGCG TCATTGTGTC AAGCGCCCTC GCCCGCCTGA AGGCGATGCG AACCGGCGCG CGTGGCATAG GACGTCTTTT CCAGGGCAAA CGCTACCTGT ATGAATTGCC GTGGTATATC GCGCTCGGCT CGAAGTCTTC GGGCAAGACA AGCGCCCTGC TGAACGCGGG TCTCGCGTTC CCTGTTGCCG AACAGATGCA GCGTGCCGCA GGCGCCGCGC AGAAGCCAAC TGCCAACGTC GACTGGTGGC TCACCAACGA TGCGGTGCTG ATCGACACGG CTGGCTACTA CACCCGTCAC GGCACATCCG GACACGCTTT GCCGCCGCCT CCGGAAAGCA ACAATCCCAC GGAGCGCAAG GCTACCGACA CAAGGACGGA GAACGAAAAA TCTGGGCATG GGAAAGCCCT CGACGCGCCG AAAGCATCGA CCGCGTCAAC CACGTGGGCC GATCCCGCGC AGGCTCGCCA GCGAATGGAC TCGGAGGAAT GGCTCGGCTT CCTCGGCATG CTTCGGACGC ACCGGCCGCG CGCACCCATC AACGGTGCGC TGCTCGCGGT CAACCTCGGC GAACTGACGA GCCAGGACGA CAGCAGCCGC ATGGCCGAAG CGGCCGCGTT GCGTGCGCGC CTGGCCGAAC TGCGTGGCGA GCTCGGTATC CGCTTTCCGG TCTATCTGGT CGTGACCGGC ATGGACCAGC TCACCGGCTT CGCCGAATAC TTTTCGTCGC TAACGGCAGA GGGCCGTGCC CAGCCATGGG GTTTTACGCT TCCCTACGGC AAGGAAACCA TCGCGAAAGA AGGCGTCACC GCACGGTGCC GCTCGGAGCT GGGCCAGCTC GCACAACGCC TCGAACGTGG CATCGATACC CGCCTGCAGG ACGAATACGA TCCGCTCCAC CGTCGCAAGC TCGCCGCGCT GTCACAGGAG TTTGCCGCCC TGAGCGCGCC GCTCATCGAA CTGATCGAGC GGGTGTTTCT CGATTCACGC TACGATGACA CGCAGCTGTA CTCGACGCTG CGCGGCGTGT ACTTCACGAG CGCAGAACAG GCTGGCAACG AGAGGGTGGC CGAGCGGCGC ACCATCGTGC AACGGGTGAT CGCGGGCATG AAGGCGCCGG CAACATCGCT GCGCGAGGCA ACCAGCGAAG GCTTCTTCCT GCACGACCTC TTCACGAAGG TTGTCATTCC CGAGGCGCAT CTCGTGCGCC CGAACCTGCG CTGGGAGTTC CGCTTCCGTC TGCTACGCCT GGTTGGCCAC GCGCTCGCCC TGCTGCTCTT CGTCTGGCTC GCCATTGGAC TGTGCGTGAG CTTCGGCAAC AACAGCGATT ACCTTGGTGC CATTGCGCGC AAGACGCAGG CGCTCGCGGC GCGTGTGGCG CAGCTGTACC ACGACCCGAA GGCGGAAGCC GTGCCCGATA CGCTGAGCGC CGCGCGCTAT CTGCCGACGT ATCAGGGGCT CGACCTGTCG GACCCCGACA GCACCTTCCG CTACGGTCTC TACACGGCCC CCGATATCGT CACGGAAAGC CGCCACATCT ATGACGCGCT TGAGGACAAC CTGCTGGTAC CGCAGATCGT GCACCGGATG GAAGACGTGA TCTCGCAGTC GATCACGAAC AAGGATCCGA AGGCGACTTA CGAGGCACTG CGCGTCTATC TCATGCTTTA TGACAAGGCG AAATTCAACG CCGATGACGT CAAGGCGTGG GTACTCGACG ACTGGGCGAA GACCGACAGC GCATCCGTAT TCGGCGGTCG CGCCTCGATG ATCGATCACG TCCAGCAATT GTTCTCCGGC ACCCGGGTAG TCCAGTCGCC GCTCATCCGC AACGACGCTC TGATCCAGCA GGCCCGGGCC TTCCTCGACG GCAGCAATGC GACCGACCGG CTCTACGAGC GGGCCAAGGC CGCCATGATG AAGGAGGCGC CTGACGAGTT CACGCTGATC CGCGCGGTGG GCCCCCAGGC GGGGACTGTC TTCACGCGTG CAAGCGGTGC GCCCCTCTCG CGCGGCGTGC CGGGCCTTTT CACGTTCGAC GGCTACCGCA ATCTTTTCGA CAAACACCTG CCCGAGTTCG TCCAGGTCGC GCGCGATGAC GATGCGTGGG TGATGGGGCG CTCTTATCTC GGGGGGCTCT CCGACCAGGC TCAAAAAAAA ACTGCGGAGC TTGTAAGGAT GGCCACTGGT GCCGACGATC CACTGACCGA AGCGATCCGG CGGGAGTACC TCACGGAGTA TGCCCAGCAA TGGGACGCAT TTCTTGGCGA CATCCGCACG GTGAGAGGGA CGAGTCTTGC GTTCAACCTG CAGGTGCTGC GCAGTTTTGC TGCACCTGAT TCCCCTCTCG CGCGGCTAGC GCGCGCGGCC GTGCACGAAA CGACGCTCAC GCAGCCAGTC GCCGCAACCG GTGGATCACT GCTCCAGAAG GCGACCGACC AGATCAGCCA GAAGGCTGAC TCCGCGCTGG GCATCCGTGC GTCGGAACAG GTCGAGCGCG AACTGGTCGA CAGCCGTTTC GCTGCGCTGC GTGAGGTCGT GACCGGCAAC GCAGAGGGTC AGGCCACGGG CGACGCGGCC GCACAGCCCG GGAAAACCGG GCTGGACGGT GTGACCAACC TGCTGAACGA CTACTACACT GCGCTCACGG TGGCGGATAA CGCCATCAGC AACAACAGCA TGCCGCCGGC GAGTGACACG GCCGCGAAGC TGAAAATGAC GGCGAACACC ATGCCGCCTC CCTTCCGTGC CGTGCTGCTG CAACTCGCCC AGCAGGGGTC GCAGGAGGTC AATCAGGGCA TCGGTCAGCT GCTTTCACGT CAGATGGGTG CGGTGATCGG CGATACGTGC CGCCTTACGA TCGAGGGCAA CTACCCGTTC ACACCAGGTA GCACGCGCGA CGTGAGCATT GACGACTTTA CGCGCGTGTT CGCGCAGGGC GGCGTCATTG ACGACTTCTT CAACAAAACG CTGGCCCCCT TCGTCGACAC CTCCGCGAAA CCGTGGCGCT ACCGCACGTT GCCCGGTGCG ACCGAGCCGG TCCAGGGGCC GGACCTTGAG CCGTTCCAGC ATGTGAAAGC GATCCGCGAT GTCTTCTTCA GCGGCCCGGG CCAGAACCAG ATGACGTGGA AAGCTAATCT CCAGGTGCCG GAGCTCGATC CCGCCATTAC CGGCCTCATG ATCGATATCG ACGGACAGAC GATGCTTTAC CAGCACGGAC CGGTCACGCC TTTCACGGTT AGCTGGCCCG GCCCTCGCGG CGGCGTACAC GCCGAGATCA CGGCGAACCC GCGCATCCGG CCCGAGACGT CAACCATGTC TGCCGATGGC CCATGGGCGT TGATGCGCCT GCTGGCCAAG GGGCACGTCG TGGAGACGGC CACACCCGGA AAGACACTCG TCGCCTTCGA TTTCGATGGG CGCCGCGCCG TGCTCGATAT GGACAGTACC GGTAGCGTTG CCAACCCGCT GACGAGCGAC GTCCTGCGAA CTTTCCGCTG CCCAAGCTCG ATGCCGGTAT TCGGTCTTGT CGACAGCGGA CCGCCGCCGG GCCTGCCTGC TGCGGGGCTT CCCATGACGC CACCCAGCCC GTATTGA
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Protein sequence | MKKFLSFLVS RQFLAFLALI VVALVIWYVG PFVAFGGLKP LAGAGMRVLV IALLLAGVLL WLVRWSTSPV IVALLCLLIW YATPLLTFGK AQPFAPESAR IIAIAVALFI FAVYWLFRLW QEMKSNRSLV DRMLTFGGKK EPSPAAVQLK EVGVIVSSAL ARLKAMRTGA RGIGRLFQGK RYLYELPWYI ALGSKSSGKT SALLNAGLAF PVAEQMQRAA GAAQKPTANV DWWLTNDAVL IDTAGYYTRH GTSGHALPPP PESNNPTERK ATDTRTENEK SGHGKALDAP KASTASTTWA DPAQARQRMD SEEWLGFLGM LRTHRPRAPI NGALLAVNLG ELTSQDDSSR MAEAAALRAR LAELRGELGI RFPVYLVVTG MDQLTGFAEY FSSLTAEGRA QPWGFTLPYG KETIAKEGVT ARCRSELGQL AQRLERGIDT RLQDEYDPLH RRKLAALSQE FAALSAPLIE LIERVFLDSR YDDTQLYSTL RGVYFTSAEQ AGNERVAERR TIVQRVIAGM KAPATSLREA TSEGFFLHDL FTKVVIPEAH LVRPNLRWEF RFRLLRLVGH ALALLLFVWL AIGLCVSFGN NSDYLGAIAR KTQALAARVA QLYHDPKAEA VPDTLSAARY LPTYQGLDLS DPDSTFRYGL YTAPDIVTES RHIYDALEDN LLVPQIVHRM EDVISQSITN KDPKATYEAL RVYLMLYDKA KFNADDVKAW VLDDWAKTDS ASVFGGRASM IDHVQQLFSG TRVVQSPLIR NDALIQQARA FLDGSNATDR LYERAKAAMM KEAPDEFTLI RAVGPQAGTV FTRASGAPLS RGVPGLFTFD GYRNLFDKHL PEFVQVARDD DAWVMGRSYL GGLSDQAQKK TAELVRMATG ADDPLTEAIR REYLTEYAQQ WDAFLGDIRT VRGTSLAFNL QVLRSFAAPD SPLARLARAA VHETTLTQPV AATGGSLLQK ATDQISQKAD SALGIRASEQ VERELVDSRF AALREVVTGN AEGQATGDAA AQPGKTGLDG VTNLLNDYYT ALTVADNAIS NNSMPPASDT AAKLKMTANT MPPPFRAVLL QLAQQGSQEV NQGIGQLLSR QMGAVIGDTC RLTIEGNYPF TPGSTRDVSI DDFTRVFAQG GVIDDFFNKT LAPFVDTSAK PWRYRTLPGA TEPVQGPDLE PFQHVKAIRD VFFSGPGQNQ MTWKANLQVP ELDPAITGLM IDIDGQTMLY QHGPVTPFTV SWPGPRGGVH AEITANPRIR PETSTMSADG PWALMRLLAK GHVVETATPG KTLVAFDFDG RRAVLDMDST GSVANPLTSD VLRTFRCPSS MPVFGLVDSG PPPGLPAAGL PMTPPSPY
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