| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphy_5348 |
|---|
| Symbol | |
|---|
| ID | 6246833 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phymatum STM815 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010623 |
|---|
| Strand | - |
|---|
| Start bp | 2488061 |
|---|
| End bp | 2489227 |
|---|
| Gene Length | 1167 bp |
|---|
| Protein Length | 388 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642597069 |
|---|
| Product | porin |
|---|
| Protein accession | YP_001861472 |
|---|
| Protein GI | 186474130 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3203] Outer membrane protein (porin) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.118369 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCCCA CTGCCCTCTC GATACTGTCG CTGGCCGCTC TCGCCACGGC CGCCAGCGCC
GCACACGCAC AAACGAGTGT CACGCTGTAC GGCACGATCG ACACGGGGAT CACATATGTC
CATAACGCCT CGGGGAACAA CAGCCTGTGG TCGCTCGGCA ATACCAGCGC GGGCAATCTG
TCAGGCACGC GCTGGGGCCT GAAGGGCAGC GAAGACCTCG GCGCAGGCAT GAAGGCCATC
TTCCAACTCG AAAGCGGCTT TGATCCGAAC ACTGGCAAGA TGGGCCAGGG CAGCCGGCTG
TTCGGCCGTC AGGCATTCGT CGGTCTTTCG CAAGATCAAT ACGGCTCCAT TACGCTCGGC
CGCCAATACG ATCCGCTGAT CGACCTCGTG CAAGGCATCA CCGCCGACAA CTACTTCGGC
AGCGCATTTG CAACGGCAGG CGACGTCGAC AACTACGACA ACAGCTTCCG TGTGAACAAC
GCGGTCAAGT ACACATCGCC CGTATTTGCG GGCCTGCAGT TCGAAGCCAT GTATTCGTTC
GGCGGCGTCG CGGGCAGCAC CGGTTCGGAG CAGTCGTATT CGGGCGCAGT CGCGTACAAC
AACGGGCCCA TCGGTCTCGC GGCAGGCTAC TACTACACGA CCAACAGCCC GGCATCGCAG
GGCCTTCGCA CGACGTGGAA CAGCACGTCC GACGGCACCT TCGACGGCCC CGTCAACCTC
GGCTATCAGA CGGCGCACTC GATCGGCATT GCACGCGTGG CGGGCCAGTA CACGGCGGGC
CCGTTCACGT TCGGCCTCGG CTATAGCAAC GCGCAGTATC GGCGAGACGA CAGCTCCGTG
TTCGGCTCGA ACGAACGCTA CAACACAGGC CAGGGTTTCG TGAACTATCA GGCTGCGCCC
GCAATCCTGC TCGGCGTCGG CTACAGCTAC ACGCACTCGA ACGGCGACAC GTCGGCCACC
TATCACCAGG TGTCGCTCGG CGCGGACTAC ACGCTGTCAA AGCGCACCGA CCTGTACATG
ACGGCCGCTT ACCAGCACGC CGGCGGCCAG ACGCGCGACG CCACCACGAA CACCGTCGCC
GACGCGCAGG CGTCGATCGG TTCATATGGC TACGCAGGCA CGAGCCATCA GGAGATGGTC
AACCTGGGCA TTCGCCACAA GTTCTAG
|
|---|
| Protein sequence | MKPTALSILS LAALATAASA AHAQTSVTLY GTIDTGITYV HNASGNNSLW SLGNTSAGNL
SGTRWGLKGS EDLGAGMKAI FQLESGFDPN TGKMGQGSRL FGRQAFVGLS QDQYGSITLG
RQYDPLIDLV QGITADNYFG SAFATAGDVD NYDNSFRVNN AVKYTSPVFA GLQFEAMYSF
GGVAGSTGSE QSYSGAVAYN NGPIGLAAGY YYTTNSPASQ GLRTTWNSTS DGTFDGPVNL
GYQTAHSIGI ARVAGQYTAG PFTFGLGYSN AQYRRDDSSV FGSNERYNTG QGFVNYQAAP
AILLGVGYSY THSNGDTSAT YHQVSLGADY TLSKRTDLYM TAAYQHAGGQ TRDATTNTVA
DAQASIGSYG YAGTSHQEMV NLGIRHKF
|
|---|
| |